Variant report

Variant	rs12701858
Chromosome Location	chr7:41070061-41070062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11771067	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12113729	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13222733	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13235016	0.91[JPT][hapmap]
rs13239481	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13247967	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1548630	0.80[ASN][1000 genomes]
rs17622437	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1859699	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1990137	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1990138	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2108183	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2190342	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35274819	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4329187	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4454200	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6959994	0.91[JPT][hapmap]
rs6960159	0.91[JPT][hapmap]
rs6974297	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs757913	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7776627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7783070	0.90[EUR][1000 genomes]
rs7792912	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7800626	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9769724	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41062800-41082200	Weak transcription	Aorta	Aorta
2	chr7:41065800-41071000	Enhancers	HMEC	breast
3	chr7:41066600-41070800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:41066600-41073600	Enhancers	NH-A	brain
5	chr7:41066800-41070600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:41066800-41070800	Enhancers	NHEK	skin
7	chr7:41067000-41070600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:41067600-41070800	Enhancers	Hela-S3	cervix
9	chr7:41067800-41071000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:41068600-41070600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:41068800-41070200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:41068800-41071200	Weak transcription	Placenta	Placenta
13	chr7:41069000-41070400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr7:41069200-41070400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:41069200-41070800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:41069200-41074600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:41069400-41082000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:41069600-41070400	Weak transcription	NHDF-Ad	bronchial
19	chr7:41069600-41070600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:41069800-41072800	Weak transcription	Osteobl	bone
21	chr7:41070000-41070400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:41070000-41070400	Enhancers	NHLF	lung

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