Variant report

Variant	rs1548630
Chromosome Location	chr7:41067781-41067782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41066799..41069295-chr7:41070275..41071792,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12701858	0.80[ASN][1000 genomes]
rs12701859	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13222733	0.83[ASN][1000 genomes]
rs13239757	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17622437	0.84[ASN][1000 genomes]
rs1859699	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1859700	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2108183	0.84[ASN][1000 genomes]
rs2190342	0.83[ASN][1000 genomes]
rs4329187	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4454200	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6462998	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs757913	0.84[ASN][1000 genomes]
rs7776627	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7792912	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9769724	0.84[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41062800-41082200	Weak transcription	Aorta	Aorta
2	chr7:41065600-41069200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41065600-41069200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:41065800-41068800	Enhancers	HSMMtube	muscle
5	chr7:41065800-41069000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:41065800-41071000	Enhancers	HMEC	breast
7	chr7:41066000-41069600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:41066600-41068800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:41066600-41069200	Enhancers	HSMM	muscle
10	chr7:41066600-41069400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:41066600-41069800	Enhancers	Osteobl	bone
12	chr7:41066600-41070000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:41066600-41070800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:41066600-41073600	Enhancers	NH-A	brain
15	chr7:41066800-41068600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:41066800-41069200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:41066800-41069600	Enhancers	NHDF-Ad	bronchial
18	chr7:41066800-41069600	Enhancers	NHLF	lung
19	chr7:41066800-41070600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:41066800-41070800	Enhancers	NHEK	skin
21	chr7:41067000-41070600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:41067600-41067800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:41067600-41067800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr7:41067600-41067800	Enhancers	Placenta	Placenta
25	chr7:41067600-41067800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr7:41067600-41069200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:41067600-41070800	Enhancers	Hela-S3	cervix

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