Variant report

Variant	rs6462998
Chromosome Location	chr7:41052738-41052739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11771067	0.87[ASN][1000 genomes]
rs12113729	0.87[ASN][1000 genomes]
rs12701859	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13239481	0.83[ASN][1000 genomes]
rs13239757	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1548630	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1859700	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7800626	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41047800-41052800	Weak transcription	NH-A	brain
2	chr7:41048600-41065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41049800-41053200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:41051000-41052800	Weak transcription	Osteobl	bone
5	chr7:41051000-41060400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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