Variant report

Variant	rs11771067
Chromosome Location	chr7:41047894-41047895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12113729	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12701858	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13222733	0.89[EUR][1000 genomes]
rs13239481	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13247967	0.81[EUR][1000 genomes]
rs17622437	0.90[EUR][1000 genomes]
rs1859699	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1859700	0.86[ASN][1000 genomes]
rs1990137	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1990138	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2108183	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2190342	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35274819	0.81[EUR][1000 genomes]
rs4329187	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4454200	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6462998	0.87[ASN][1000 genomes]
rs6974297	0.81[EUR][1000 genomes]
rs757913	0.88[EUR][1000 genomes]
rs7776627	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7783070	0.81[EUR][1000 genomes]
rs7792912	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7800626	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9769724	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41037000-41050400	Weak transcription	Aorta	Aorta
2	chr7:41041600-41048200	Enhancers	Placenta	Placenta
3	chr7:41042000-41048000	Enhancers	HMEC	breast
4	chr7:41042200-41048000	Enhancers	NHEK	skin
5	chr7:41042200-41050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:41042400-41048400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:41044200-41048000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:41044600-41048000	Enhancers	Osteobl	bone
9	chr7:41045400-41049200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:41045600-41048000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:41045800-41048000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:41045800-41048200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:41046400-41050000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:41046400-41050000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:41046600-41048000	Enhancers	Fetal Lung	lung
16	chr7:41047000-41048200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:41047000-41048200	Enhancers	Fetal Brain Female	brain
18	chr7:41047200-41048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:41047200-41048000	Enhancers	Hela-S3	cervix
20	chr7:41047200-41049200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr7:41047200-41049800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:41047200-41049800	Weak transcription	NHDF-Ad	bronchial
23	chr7:41047200-41050000	Weak transcription	NHLF	lung
24	chr7:41047200-41050200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:41047200-41050200	Weak transcription	HUVEC	blood vessel
26	chr7:41047400-41050000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:41047400-41050200	Weak transcription	HSMMtube	muscle
28	chr7:41047800-41048000	Enhancers	Left Ventricle	heart
29	chr7:41047800-41049000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr7:41047800-41049600	Weak transcription	Fetal Muscle Leg	muscle
31	chr7:41047800-41049800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr7:41047800-41050000	Weak transcription	HSMM	muscle
33	chr7:41047800-41050400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:41047800-41052800	Weak transcription	NH-A	brain

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