Variant report

Variant	rs6974297
Chromosome Location	chr7:41044183-41044184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:41023501..41025536-chr7:41042480..41044856,2	MCF-7	breast:
2	chr7:41042842..41044547-chr7:41046051..41047750,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11771067	0.81[EUR][1000 genomes]
rs12113729	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12701848	0.89[ASN][1000 genomes]
rs12701849	0.89[ASN][1000 genomes]
rs12701850	0.89[ASN][1000 genomes]
rs12701851	0.89[ASN][1000 genomes]
rs12701858	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13222733	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13223604	0.89[ASN][1000 genomes]
rs13235016	0.81[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[ASN][1000 genomes]
rs13239481	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13247967	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17622437	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17715157	0.89[ASN][1000 genomes]
rs17771915	0.89[ASN][1000 genomes]
rs1859699	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1990137	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1990138	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2108183	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2190342	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2190348	0.89[ASN][1000 genomes]
rs34951430	0.89[ASN][1000 genomes]
rs35273726	0.89[ASN][1000 genomes]
rs35274819	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4329187	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4454200	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59555466	0.91[ASN][1000 genomes]
rs6942431	0.87[ASN][1000 genomes]
rs6946439	0.89[ASN][1000 genomes]
rs6959994	0.81[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[ASN][1000 genomes]
rs6960159	0.81[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[ASN][1000 genomes]
rs6967269	0.89[ASN][1000 genomes]
rs757913	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7776627	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7783070	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7792912	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7800626	0.80[EUR][1000 genomes]
rs9769724	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs979863	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41036400-41045000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:41037000-41050400	Weak transcription	Aorta	Aorta
3	chr7:41041600-41048200	Enhancers	Placenta	Placenta
4	chr7:41042000-41046200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr7:41042000-41047200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:41042000-41048000	Enhancers	HMEC	breast
7	chr7:41042200-41048000	Enhancers	NHEK	skin
8	chr7:41042200-41050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:41042400-41048400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:41043400-41044800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr7:41043600-41044200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:41043600-41044600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:41043600-41044600	Weak transcription	NH-A	brain
14	chr7:41043600-41046800	Enhancers	Hela-S3	cervix
15	chr7:41043800-41044400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:41043800-41044800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:41043800-41045800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:41043800-41047000	Weak transcription	Fetal Brain Female	brain
19	chr7:41044000-41045600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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