Variant report

Variant	rs7792912
Chromosome Location	chr7:41066269-41066270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11771067	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12113729	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12701858	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13222733	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13235016	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs13239481	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13247967	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1548630	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17622437	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1859699	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990137	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1990138	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2108183	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190342	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35274819	0.90[EUR][1000 genomes]
rs4329187	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4454200	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59555466	0.84[ASN][1000 genomes]
rs6959994	1.00[JPT][hapmap]
rs6960159	1.00[JPT][hapmap]
rs6974297	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs757913	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776627	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7783070	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7800626	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9769724	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs979863	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7792912	LOC646999	cis	parietal	SCAN
rs7792912	TMED4	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41060800-41066600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:41062800-41082200	Weak transcription	Aorta	Aorta
3	chr7:41064000-41066600	Weak transcription	Osteobl	bone
4	chr7:41065600-41069200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:41065600-41069200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:41065800-41066800	Weak transcription	NHDF-Ad	bronchial
7	chr7:41065800-41067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:41065800-41068800	Enhancers	HSMMtube	muscle
9	chr7:41065800-41069000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:41065800-41071000	Enhancers	HMEC	breast
11	chr7:41066000-41069600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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