Variant report
| Variant | rs59596814 |
|---|---|
| Chromosome Location | chr12:58514109-58514110 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs2101781 | 1.00[AMR][1000 genomes] |
| rs55817245 | 1.00[AMR][1000 genomes] |
| rs55910119 | 1.00[AMR][1000 genomes] |
| rs56407862 | 1.00[AMR][1000 genomes] |
| rs57673161 | 1.00[AMR][1000 genomes] |
| rs61571539 | 1.00[AMR][1000 genomes] |
| rs74095956 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74096840 | 1.00[AMR][1000 genomes] |
| rs74096846 | 1.00[AMR][1000 genomes] |
| rs74096847 | 1.00[AMR][1000 genomes] |
| rs74096849 | 1.00[AMR][1000 genomes] |
| rs74096851 | 1.00[AMR][1000 genomes] |
| rs74096853 | 1.00[AMR][1000 genomes] |
| rs74096854 | 1.00[AMR][1000 genomes] |
| rs74096855 | 1.00[AMR][1000 genomes] |
| rs74096856 | 1.00[AMR][1000 genomes] |
| rs74096864 | 1.00[AMR][1000 genomes] |
| rs74096865 | 1.00[AMR][1000 genomes] |
| rs74096866 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899124 | chr12:58391839-58883507 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv729 | chr12:58490094-58535466 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2760225 | chr12:58490832-58514112 | Active TSS Weak transcription Enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv3332556 | chr12:58499734-58525494 | Enhancers Active TSS Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| 5 | esv3367170 | chr12:58500734-58523126 | Weak transcription Enhancers Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| 6 | esv2587357 | chr12:58509475-58514805 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:58514000-58514200 | Enhancers | Psoas Muscle | Psoas |
| 2 | chr12:58514000-58517000 | Weak transcription | Ovary | ovary |
