Variant report

Variant	rs61571539
Chromosome Location	chr12:58707333-58707334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58706895..58709674-chr12:58716044..58718187,2	MCF-7	breast:
2	chr12:58702456..58704954-chr12:58705932..58708062,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2101781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55817245	1.00[AMR][1000 genomes]
rs55910119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56407862	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57673161	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59596814	1.00[AMR][1000 genomes]
rs74095956	1.00[AMR][1000 genomes]
rs74096840	1.00[AMR][1000 genomes]
rs74096846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74096847	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74096849	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74096851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74096853	1.00[AMR][1000 genomes]
rs74096854	1.00[AMR][1000 genomes]
rs74096855	1.00[AMR][1000 genomes]
rs74096856	1.00[AMR][1000 genomes]
rs74096864	1.00[AMR][1000 genomes]
rs74096865	1.00[AMR][1000 genomes]
rs74096866	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv730	chr12:58698792-58759096	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58705000-58708200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:58705400-58708000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:58705400-58708200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:58705400-58708200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr12:58705400-58709000	Enhancers	HUVEC	blood vessel
6	chr12:58705400-58710000	Weak transcription	Fetal Intestine Large	intestine
7	chr12:58706200-58709200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:58706200-58709400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:58706400-58709000	Enhancers	Osteobl	bone
10	chr12:58706600-58708600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:58706800-58707600	Enhancers	NHLF	lung
12	chr12:58706800-58708600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:58706800-58709000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:58706800-58709000	Enhancers	NHDF-Ad	bronchial
15	chr12:58706800-58709200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:58707000-58707400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr12:58707000-58707400	Flanking Active TSS	NH-A	brain
18	chr12:58707000-58707600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr12:58707000-58707600	Enhancers	NHEK	skin
20	chr12:58707000-58708000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:58707000-58708600	Enhancers	HSMM	muscle
22	chr12:58707000-58708800	Enhancers	HMEC	breast
23	chr12:58707200-58707800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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