Variant report

Variant	rs74096864
Chromosome Location	chr12:58732567-58732568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2101781	1.00[AMR][1000 genomes]
rs55817245	1.00[AMR][1000 genomes]
rs55910119	1.00[AMR][1000 genomes]
rs56407862	1.00[AMR][1000 genomes]
rs57673161	1.00[AMR][1000 genomes]
rs59596814	1.00[AMR][1000 genomes]
rs61571539	1.00[AMR][1000 genomes]
rs74096840	1.00[AMR][1000 genomes]
rs74096846	1.00[AMR][1000 genomes]
rs74096847	1.00[AMR][1000 genomes]
rs74096849	1.00[AMR][1000 genomes]
rs74096851	1.00[AMR][1000 genomes]
rs74096853	1.00[AMR][1000 genomes]
rs74096854	1.00[AMR][1000 genomes]
rs74096855	1.00[AMR][1000 genomes]
rs74096856	1.00[AMR][1000 genomes]
rs74096865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74096866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv730	chr12:58698792-58759096	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1052096	chr12:58716449-58733347	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8976	chr12:58717951-58734512	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv84	chr12:58720676-58746311	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv510602	chr12:58722449-58770942	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58731000-58732600	Enhancers	Fetal Intestine Small	intestine
2	chr12:58731200-58735600	Weak transcription	Fetal Kidney	kidney
3	chr12:58731200-58735600	Weak transcription	NHLF	lung
4	chr12:58731200-58736200	Weak transcription	Adipose Nuclei	Adipose
5	chr12:58731400-58734600	Weak transcription	HUVEC	blood vessel
6	chr12:58731400-58735200	Weak transcription	Fetal Lung	lung
7	chr12:58731400-58735600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:58731400-58735600	Weak transcription	NH-A	brain
9	chr12:58731400-58735600	Weak transcription	NHDF-Ad	bronchial
10	chr12:58731400-58736400	Weak transcription	HSMMtube	muscle
11	chr12:58731600-58735600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:58731600-58746600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:58731800-58735600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr12:58731800-58738200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:58732000-58736200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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