Variant report
| Variant | rs74096856 |
|---|---|
| Chromosome Location | chr12:58716904-58716905 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:58706895..58709674-chr12:58716044..58718187,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs2101781 | 1.00[AMR][1000 genomes] |
| rs55817245 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55910119 | 1.00[AMR][1000 genomes] |
| rs56407862 | 1.00[AMR][1000 genomes] |
| rs57673161 | 1.00[AMR][1000 genomes] |
| rs59596814 | 1.00[AMR][1000 genomes] |
| rs61571539 | 1.00[AMR][1000 genomes] |
| rs74095956 | 1.00[AMR][1000 genomes] |
| rs74096840 | 1.00[AMR][1000 genomes] |
| rs74096846 | 1.00[AMR][1000 genomes] |
| rs74096847 | 1.00[AMR][1000 genomes] |
| rs74096849 | 1.00[AMR][1000 genomes] |
| rs74096851 | 1.00[AMR][1000 genomes] |
| rs74096853 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74096854 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74096855 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74096864 | 1.00[AMR][1000 genomes] |
| rs74096865 | 1.00[AMR][1000 genomes] |
| rs74096866 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899124 | chr12:58391839-58883507 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv730 | chr12:58698792-58759096 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035772 | chr12:58708608-58732055 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1052096 | chr12:58716449-58733347 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:58709200-58721200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
