Variant report
| Variant | rs59671854 |
|---|---|
| Chromosome Location | chr14:85694704-85694705 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11626130 | 0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12147907 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12879844 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12881773 | 1.00[ASN][1000 genomes] |
| rs12896378 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12896555 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12897078 | 0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1375574 | 1.00[ASN][1000 genomes] |
| rs17201769 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17796627 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34003123 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35112032 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35927240 | 0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66792363 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67123871 | 1.00[ASN][1000 genomes] |
| rs72685724 | 1.00[ASN][1000 genomes] |
| rs72687543 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72687586 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9671968 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs967282 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3401331 | chr14:85332747-85716351 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv832846 | chr14:85517736-85715650 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3381198 | chr14:85690248-85709087 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv902168 | chr14:85693904-85716792 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:85690800-85700400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 2 | chr14:85691200-85696600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
