Variant report

Variant	rs59679391
Chromosome Location	chr19:52598621-52598622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:52598580-52598730	GM12878	blood:	n/a	chr19:52598610-52598619
2	MYC	chr19:52598424-52599188	K562	blood:	n/a	n/a
3	BHLHE40	chr19:52598521-52599141	K562	blood:	n/a	n/a
4	EGR1	chr19:52598412-52598729	K562	blood:	n/a	n/a
5	UBTF	chr19:52598404-52599163	K562	blood:	n/a	n/a
6	POLR2A	chr19:52598371-52599160	K562	blood:	n/a	n/a
7	POLR2A	chr19:52598567-52599296	SK-N-MC	brain:	n/a	n/a
8	E2F6	chr19:52598357-52599240	A549	lung:	n/a	chr19:52598711-52598725 chr19:52599057-52599066
9	POLR2A	chr19:52598574-52599150	Hela-S3	cervix:	n/a	n/a
10	MAX	chr19:52598325-52599216	NB4	blood:	n/a	n/a
11	MAX	chr19:52598332-52599206	K562	blood:	n/a	n/a
12	MAX	chr19:52598384-52599220	ECC-1	luminal epithelium:	n/a	n/a
13	GABPA	chr19:52598606-52599283	A549	lung:	n/a	chr19:52599221-52599230 chr19:52599057-52599066
14	MAX	chr19:52598343-52598622	GM12878	blood:	n/a	n/a
15	TBP	chr19:52598531-52599436	H1-hESC	embryonic stem cell:	n/a	n/a
16	MAX	chr19:52598377-52599236	A549	lung:	n/a	chr19:52599221-52599231
17	POLR2A	chr19:52598513-52599170	GM12878	blood:	n/a	n/a
18	POLR2A	chr19:52598571-52599200	MCF10A-Er-Src	breast:	n/a	n/a
19	MAX	chr19:52598363-52599250	A549	lung:	n/a	chr19:52599221-52599231
20	MYC	chr19:52598410-52599191	K562	blood:	n/a	n/a
21	POLR2A	chr19:52598496-52599174	HepG2	liver:	n/a	n/a
22	MAX	chr19:52598435-52598889	H1-hESC	embryonic stem cell:	n/a	n/a
23	MXI1	chr19:52598407-52599124	GM12878	blood:	n/a	n/a
24	SIN3AK20	chr19:52598571-52599160	MCF-7	breast:	n/a	n/a
25	MAX	chr19:52598268-52598718	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr19:52598613-52599187	HUVEC	blood vessel:	n/a	n/a
27	TBL1XR1	chr19:52598604-52599068	K562	blood:	n/a	n/a
28	CTCF	chr19:52598520-52598670	HEK293	kidney:	n/a	chr19:52598610-52598619
29	GABPA	chr19:52598389-52599328	K562	blood:	n/a	chr19:52599221-52599230 chr19:52599057-52599066
30	POLR2A	chr19:52598424-52599186	GM18505	blood:	n/a	n/a
31	POLR2A	chr19:52598570-52599298	U87	brain:	n/a	n/a
32	ELF1	chr19:52598300-52599271	GM12878	blood:	n/a	chr19:52599006-52599017 chr19:52599007-52599016 chr19:52599230-52599242
33	E2F6	chr19:52598390-52598632	K562	blood:	n/a	n/a
34	ELF1	chr19:52598606-52599325	MCF-7	breast:	n/a	chr19:52599006-52599017 chr19:52599007-52599016 chr19:52599230-52599242
35	POLR2A	chr19:52598534-52599160	GM12891	blood:	n/a	n/a
36	E2F6	chr19:52598329-52599155	K562	blood:	n/a	chr19:52598711-52598725 chr19:52599057-52599066
37	POLR2A	chr19:52598482-52599183	GM15510	blood:	n/a	n/a
38	CTCF	chr19:52598500-52598650	GM12866	blood:	n/a	chr19:52598610-52598619 chr19:52598502-52598518
39	CTCF	chr19:52598480-52598630	HMEC	breast:	n/a	chr19:52598610-52598619 chr19:52598502-52598518
40	GABPA	chr19:52598297-52599386	MCF-7	breast:	n/a	chr19:52599221-52599230 chr19:52599057-52599066
41	GABPA	chr19:52598555-52599375	SK-N-SH	brain:	n/a	chr19:52599221-52599230 chr19:52599057-52599066
42	MXI1	chr19:52598021-52599475	SK-N-SH	brain:	n/a	n/a
43	MTA3	chr19:52598470-52599116	GM12878	blood:	n/a	n/a
44	PML	chr19:52598607-52599239	GM12878	blood:	n/a	n/a
45	TAF1	chr19:52598395-52599391	H1-hESC	embryonic stem cell:	n/a	n/a
46	MAX	chr19:52598354-52598759	MCF-7	breast:	n/a	n/a
47	MXI1	chr19:52597679-52599381	IMR90	lung:	n/a	n/a
48	MAZ	chr19:52598519-52599285	K562	blood:	n/a	chr19:52599221-52599231
49	USF2	chr19:52598585-52598976	GM12878	blood:	n/a	n/a
50	POLR2A	chr19:52598325-52599179	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:52597551..52599096-chr19:52643130..52644965,2	K562	blood:
2	chr19:52597459..52600188-chr19:52771516..52774031,2	MCF-7	breast:
3	chr19:52597423..52599077-chr19:52692134..52694986,2	K562	blood:
4	chr19:52551202..52553746-chr19:52596231..52599092,3	K562	blood:

Variant related genes	Relation type
ZNF841	TF binding region
ENSG00000105568	Chromatin interaction
ENSG00000256087	Chromatin interaction
ENSG00000204611	Chromatin interaction
ENSG00000196214	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55985837	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56334318	1.00[AFR][1000 genomes]
rs56371696	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56403359	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59132297	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7252698	0.91[AFR][1000 genomes]
rs7253999	0.91[AFR][1000 genomes]
rs73934737	0.87[AFR][1000 genomes]
rs73934739	0.87[AFR][1000 genomes]
rs73934753	1.00[AFR][1000 genomes]
rs73934993	1.00[AMR][1000 genomes]
rs73937269	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937274	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937275	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8106962	0.91[AFR][1000 genomes]
rs8107009	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758767	chr19:51991896-52604625	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	578 gene(s)	inside rSNPs	diseases
2	nsv1065410	chr19:52103914-52889530	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	596 gene(s)	inside rSNPs	diseases
3	esv34938	chr19:52227916-52630935	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv1061029	chr19:52249900-52614747	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2757699	chr19:52259571-52604625	Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	esv2751797	chr19:52259588-52604625	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1061100	chr19:52259839-52617390	Strong transcription Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv1060519	chr19:52270087-52628611	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv579998	chr19:52270942-52613105	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1056146	chr19:52271018-52617390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv1057485	chr19:52271309-52614747	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
12	nsv870043	chr19:52271348-52619860	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
13	nsv534202	chr19:52272356-52627403	Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv1059263	chr19:52273257-52607771	ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv1057290	chr19:52273257-52614747	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
16	nsv1064732	chr19:52273257-52617390	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
17	nsv1059924	chr19:52273257-52628611	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
18	nsv1057217	chr19:52283498-52617132	Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
19	nsv1062154	chr19:52283498-52617390	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1060988	chr19:52283498-52621644	Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
21	nsv1058292	chr19:52284671-52614747	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
22	nsv1063940	chr19:52284671-52617390	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
23	esv2751798	chr19:52285788-52604625	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
24	esv2751799	chr19:52285788-52604625	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
25	esv2751800	chr19:52285788-52604625	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
26	esv2751801	chr19:52285788-52604625	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
27	esv34502	chr19:52285829-52604625	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
28	nsv458734	chr19:52287452-52601399	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
29	nsv579999	chr19:52287452-52601399	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
30	nsv458735	chr19:52287452-52607765	Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
31	nsv458736	chr19:52287452-52607765	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
32	nsv580000	chr19:52287452-52607765	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
33	nsv580002	chr19:52304146-52617298	Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
34	nsv458737	chr19:52306547-52601399	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
35	nsv580003	chr19:52306547-52601399	Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
36	nsv458738	chr19:52306547-52621644	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
37	nsv580004	chr19:52306547-52621644	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
38	nsv531306	chr19:52327602-52616696	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
39	nsv534124	chr19:52368797-52616696	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
40	nsv833872	chr19:52431787-52619024	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
41	esv3366000	chr19:52491073-52842946	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
42	nsv1066015	chr19:52502213-52890308	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
43	nsv544059	chr19:52502213-52890308	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
44	nsv2535	chr19:52580906-52625889	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
45	esv3433050	chr19:52595705-52639973	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52583600-52599600	ZNF genes & repeats	GM12878-XiMat	blood
2	chr19:52596400-52599400	Active TSS	Muscle Satellite Cultured Cells	--
3	chr19:52596400-52599600	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr19:52597000-52599200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr19:52597000-52599200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr19:52597000-52599400	Active TSS	H1 Cell Line	embryonic stem cell
7	chr19:52597000-52599400	Active TSS	Fetal Kidney	kidney
8	chr19:52597000-52599400	Active TSS	HSMMtube	muscle
9	chr19:52597000-52599600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr19:52597000-52599600	Active TSS	NHDF-Ad	bronchial
11	chr19:52597000-52599600	Active TSS	NHLF	lung
12	chr19:52597200-52599000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr19:52597200-52599200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr19:52597200-52599200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr19:52597200-52599400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr19:52597200-52599400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
17	chr19:52597200-52599400	Active TSS	Right Ventricle	heart
18	chr19:52597200-52599400	Active TSS	HSMM	muscle
19	chr19:52597200-52599600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr19:52597200-52599600	Active TSS	Pancreas	Pancrea
21	chr19:52597400-52598800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr19:52597400-52599200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr19:52597400-52599200	Active TSS	Gastric	stomach
24	chr19:52597400-52599400	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr19:52597400-52599400	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr19:52597400-52599400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr19:52597400-52599400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr19:52597400-52599400	Active TSS	Fetal Intestine Small	intestine
29	chr19:52597400-52599600	Active TSS	Primary T cells from cord blood	blood
30	chr19:52597400-52599600	Active TSS	Ovary	ovary
31	chr19:52597400-52599600	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr19:52597400-52599600	Active TSS	Rectal Smooth Muscle	rectum
33	chr19:52597400-52599600	Active TSS	NH-A	brain
34	chr19:52597600-52599000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr19:52597600-52599000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr19:52597600-52599000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr19:52597600-52599000	Active TSS	Stomach Mucosa	stomach
38	chr19:52597600-52599200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr19:52597600-52599200	Active TSS	Esophagus	oesophagus
40	chr19:52597600-52599400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:52597600-52599400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr19:52597600-52599400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr19:52597600-52599400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr19:52597600-52599400	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr19:52597600-52599400	Active TSS	K562	blood
46	chr19:52597600-52599600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr19:52597600-52599600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:52597600-52599600	Active TSS	Fetal Intestine Large	intestine
49	chr19:52597600-52599600	Active TSS	Lung	lung
50	chr19:52597600-52600000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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