Variant report

Variant	rs59698692
Chromosome Location	chr11:34191198-34191199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
2	chr11:34186094..34192097-chr11:34378097..34382585,10	MCF-7	breast:
3	chr11:34187334..34191068-chr11:34191112..34197188,7	K562	blood:
4	chr11:34186684..34189274-chr11:34189762..34192560,2	MCF-7	breast:
5	chr11:34187306..34189277-chr11:34191112..34193482,2	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

rs_ID	r²[population]
rs10836157	0.96[ASN][1000 genomes]
rs11032535	0.98[ASN][1000 genomes]
rs11032537	0.94[ASN][1000 genomes]
rs1321017	0.98[ASN][1000 genomes]
rs1321018	0.96[ASN][1000 genomes]
rs1321019	0.98[ASN][1000 genomes]
rs2473918	0.96[ASN][1000 genomes]
rs2955934	0.94[ASN][1000 genomes]
rs2955935	0.96[ASN][1000 genomes]
rs2957492	0.98[ASN][1000 genomes]
rs2982606	0.96[ASN][1000 genomes]
rs2982607	0.96[ASN][1000 genomes]
rs2982608	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34427038	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7102200	1.00[ASN][1000 genomes]
rs7120934	0.98[ASN][1000 genomes]
rs7121122	0.98[ASN][1000 genomes]
rs7121208	0.98[ASN][1000 genomes]
rs7121259	0.98[ASN][1000 genomes]
rs7124122	0.98[ASN][1000 genomes]
rs7937404	0.98[ASN][1000 genomes]
rs7950979	0.98[ASN][1000 genomes]

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:34174600-34193400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:34176800-34195600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:34177000-34196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:34177400-34195400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:34177600-34194600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:34177600-34196200	Weak transcription	Primary T cells from cord blood	blood
9	chr11:34177800-34195800	Weak transcription	Spleen	Spleen
10	chr11:34177800-34196000	Weak transcription	GM12878-XiMat	blood
11	chr11:34178800-34192600	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:34178800-34195200	Weak transcription	Hela-S3	cervix
13	chr11:34179200-34195400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:34179400-34196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:34179600-34193600	Strong transcription	Liver	Liver
16	chr11:34180000-34195200	Strong transcription	HepG2	liver
17	chr11:34180600-34195400	Weak transcription	Fetal Thymus	thymus
18	chr11:34181400-34195400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:34182200-34195400	Weak transcription	Osteobl	bone
20	chr11:34182400-34191600	Weak transcription	Left Ventricle	heart
21	chr11:34182800-34196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:34183000-34191800	Strong transcription	Right Ventricle	heart
23	chr11:34183000-34195200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
25	chr11:34183800-34194400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:34184200-34191800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:34184200-34195400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:34184200-34195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:34184200-34195800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:34184400-34195400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:34184600-34196000	Weak transcription	Gastric	stomach
32	chr11:34184800-34195400	Weak transcription	Brain Anterior Caudate	brain
33	chr11:34185000-34195400	Weak transcription	Brain Angular Gyrus	brain
34	chr11:34186800-34191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:34187000-34195400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:34188000-34191600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:34188000-34192600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:34188000-34192800	Strong transcription	Aorta	Aorta
39	chr11:34188200-34191800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:34188400-34195000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:34188400-34196200	Weak transcription	Esophagus	oesophagus
42	chr11:34188800-34191400	Weak transcription	Brain Substantia Nigra	brain
43	chr11:34189200-34191800	Weak transcription	Placenta	Placenta
44	chr11:34189200-34195200	Weak transcription	Brain Germinal Matrix	brain
45	chr11:34189400-34192000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:34189600-34192000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:34189600-34195400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:34189600-34195800	Weak transcription	Thymus	Thymus
49	chr11:34189800-34191400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:34189800-34191600	Enhancers	HSMMtube	muscle

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