Variant report

Variant	rs7102200
Chromosome Location	chr11:34195155-34195156
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34194851..34196566-chr11:34380231..34381621,20	MCF-7	breast:
2	chr11:34194734..34196633-chr11:34370779..34372924,2	MCF-7	breast:
3	chr11:34192703..34198960-chr11:34377862..34381176,7	MCF-7	breast:
4	chr11:34194502..34196652-chr11:34202672..34204738,2	MCF-7	breast:
5	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
6	chr11:34194574..34196740-chr11:34221651..34224384,2	K562	blood:
7	chr11:34071760..34074563-chr11:34194562..34197437,2	MCF-7	breast:
8	chr11:34187334..34191068-chr11:34191112..34197188,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10836157	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032535	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032537	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1321017	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321018	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1321019	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569774	0.82[CEU][hapmap];0.89[TSI][hapmap]
rs2143868	0.81[CHD][hapmap]
rs2467383	0.89[CEU][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2473918	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2955934	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2955935	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957492	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2982606	0.82[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2982607	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2982608	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34427038	0.87[ASN][1000 genomes]
rs59698692	1.00[ASN][1000 genomes]
rs7120934	0.89[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.80[MKK][hapmap];0.89[TSI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7121122	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7121208	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7121259	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124122	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7937404	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950979	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910256	0.86[JPT][hapmap]
rs910257	0.88[CHD][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523431	chr11:34192092-34199849	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:34176800-34195600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:34177000-34196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:34177400-34195400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:34177600-34196200	Weak transcription	Primary T cells from cord blood	blood
7	chr11:34177800-34195800	Weak transcription	Spleen	Spleen
8	chr11:34177800-34196000	Weak transcription	GM12878-XiMat	blood
9	chr11:34178800-34195200	Weak transcription	Hela-S3	cervix
10	chr11:34179200-34195400	Weak transcription	Adipose Nuclei	Adipose
11	chr11:34179400-34196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:34180000-34195200	Strong transcription	HepG2	liver
13	chr11:34180600-34195400	Weak transcription	Fetal Thymus	thymus
14	chr11:34181400-34195400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:34182200-34195400	Weak transcription	Osteobl	bone
16	chr11:34182800-34196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:34183000-34195200	Strong transcription	Stomach Smooth Muscle	stomach
18	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
19	chr11:34184200-34195400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:34184200-34195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:34184200-34195800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:34184400-34195400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:34184600-34196000	Weak transcription	Gastric	stomach
24	chr11:34184800-34195400	Weak transcription	Brain Anterior Caudate	brain
25	chr11:34185000-34195400	Weak transcription	Brain Angular Gyrus	brain
26	chr11:34187000-34195400	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:34188400-34196200	Weak transcription	Esophagus	oesophagus
28	chr11:34189200-34195200	Weak transcription	Brain Germinal Matrix	brain
29	chr11:34189600-34195400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:34189600-34195800	Weak transcription	Thymus	Thymus
31	chr11:34190200-34195600	Weak transcription	Fetal Brain Female	brain
32	chr11:34190400-34195600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:34190400-34195800	Weak transcription	Pancreas	Pancrea
34	chr11:34190600-34195800	Weak transcription	NH-A	brain
35	chr11:34190600-34196000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:34191800-34195400	Weak transcription	A549	lung
37	chr11:34191800-34195800	Weak transcription	Right Ventricle	heart
38	chr11:34191800-34195800	Weak transcription	HUVEC	blood vessel
39	chr11:34192200-34195600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:34192400-34195200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:34192400-34196000	Weak transcription	Left Ventricle	heart
42	chr11:34192600-34195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:34192600-34196000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:34192800-34195200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:34192800-34203000	Weak transcription	Aorta	Aorta
46	chr11:34193000-34195800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:34193400-34195200	Weak transcription	Brain Substantia Nigra	brain
48	chr11:34193400-34195800	Weak transcription	HSMM	muscle
49	chr11:34193400-34196000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:34193400-34196200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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