Variant report

Variant	rs11032535
Chromosome Location	chr11:34196278-34196279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34194851..34196566-chr11:34380231..34381621,20	MCF-7	breast:
2	chr11:34195965..34197005-chr11:34489545..34490431,3	K562	blood:
3	chr11:34194734..34196633-chr11:34370779..34372924,2	MCF-7	breast:
4	chr11:34192703..34198960-chr11:34377862..34381176,7	MCF-7	breast:
5	chr11:34194502..34196652-chr11:34202672..34204738,2	MCF-7	breast:
6	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
7	chr11:34195400..34196504-chr11:34379832..34381736,16	MCF-7	breast:
8	chr11:34194574..34196740-chr11:34221651..34224384,2	K562	blood:
9	chr11:34195619..34196581-chr11:34378000..34378999,2	MCF-7	breast:
10	chr11:34071760..34074563-chr11:34194562..34197437,2	MCF-7	breast:
11	chr11:34187334..34191068-chr11:34191112..34197188,7	K562	blood:
12	chr11:34195960..34197951-chr11:34375178..34377158,2	MCF-7	breast:
13	chr11:33829510..33830030-chr11:34195544..34196521,2	K562	blood:
14	chr11:34195780..34196501-chr11:34488819..34489403,2	K562	blood:
15	chr11:34195492..34196865-chr11:34379079..34381984,35	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135387	Chromatin interaction
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10836157	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11032537	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1321017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321018	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467375	0.81[ASN][1000 genomes]
rs2467383	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2473918	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2955934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2955935	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957492	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2982606	0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2982607	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2982608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs34427038	0.89[ASN][1000 genomes]
rs59698692	0.98[ASN][1000 genomes]
rs7102200	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7120934	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121122	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121208	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121259	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124122	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937404	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950979	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910256	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs910257	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523431	chr11:34192092-34199849	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
2	chr11:34192800-34203000	Weak transcription	Aorta	Aorta
3	chr11:34193800-34198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:34195200-34196600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:34195400-34196400	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:34195400-34196400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr11:34195400-34196400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:34195400-34196400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr11:34195400-34196400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:34195400-34196600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:34195400-34196600	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr11:34195400-34196800	Enhancers	Brain Angular Gyrus	brain
13	chr11:34195400-34197000	Enhancers	Fetal Thymus	thymus
14	chr11:34195600-34196400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr11:34195600-34196600	Active TSS	Fetal Brain Female	brain
16	chr11:34195800-34196400	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:34195800-34196400	Active TSS	H9 Cell Line	embryonic stem cell
18	chr11:34195800-34196400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:34195800-34196400	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr11:34195800-34196400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:34195800-34196400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:34195800-34196400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr11:34195800-34196400	Active TSS	Colon Smooth Muscle	Colon
24	chr11:34195800-34196400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr11:34195800-34196400	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr11:34195800-34196400	Enhancers	Ovary	ovary
27	chr11:34195800-34196400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr11:34195800-34196400	Enhancers	Thymus	Thymus
29	chr11:34195800-34196400	Flanking Active TSS	HMEC	breast
30	chr11:34195800-34196400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr11:34195800-34196400	Flanking Active TSS	Osteobl	bone
32	chr11:34195800-34196600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:34195800-34196600	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr11:34195800-34196600	Flanking Active TSS	Placenta	Placenta
35	chr11:34195800-34196600	Enhancers	Pancreas	Pancrea
36	chr11:34195800-34196800	Enhancers	Spleen	Spleen
37	chr11:34196000-34196400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:34196000-34196400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:34196000-34196400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:34196000-34196400	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr11:34196000-34196400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr11:34196000-34196400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr11:34196000-34196400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr11:34196000-34196400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr11:34196000-34196400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:34196000-34196400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:34196000-34196400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:34196000-34196400	Flanking Active TSS	Liver	Liver
49	chr11:34196000-34196400	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr11:34196000-34196400	Flanking Active TSS	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links