Variant report

Variant	rs910256
Chromosome Location	chr11:34202030-34202031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34198458..34205212-chr11:34376041..34381079,14	MCF-7	breast:
2	chr11:34200978..34204921-chr11:34206145..34211160,6	K562	blood:
3	chr11:34199620..34202889-chr11:34205068..34208989,4	K562	blood:
4	chr11:34201889..34204263-chr11:34210189..34212019,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction
ENSG00000201867	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11032535	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs1321017	0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs1321018	0.82[EUR][1000 genomes]
rs1321019	0.80[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs2143868	0.83[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2473915	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2473918	0.86[JPT][hapmap]
rs2955934	0.86[JPT][hapmap]
rs2957492	0.82[EUR][1000 genomes]
rs2982608	0.86[JPT][hapmap]
rs6484698	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs6484699	0.89[ASN][1000 genomes]
rs7102200	0.86[JPT][hapmap]
rs7120934	0.93[JPT][hapmap]
rs7121122	0.81[EUR][1000 genomes]
rs7121208	0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs7121259	0.85[JPT][hapmap]
rs7124122	0.81[EUR][1000 genomes]
rs7937404	0.82[EUR][1000 genomes]
rs910257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34192800-34203000	Weak transcription	Aorta	Aorta
2	chr11:34196200-34207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:34196400-34203400	Weak transcription	Fetal Brain Male	brain
4	chr11:34196400-34206800	Weak transcription	Gastric	stomach
5	chr11:34196400-34207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:34196600-34203000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:34196600-34204400	Weak transcription	HSMM	muscle
8	chr11:34196600-34204800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:34196600-34205800	Weak transcription	Fetal Brain Female	brain
10	chr11:34196600-34206000	Weak transcription	Pancreas	Pancrea
11	chr11:34196600-34206200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:34196600-34207600	Weak transcription	Left Ventricle	heart
13	chr11:34196600-34210200	Weak transcription	HepG2	liver
14	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
15	chr11:34196800-34203200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:34196800-34205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:34196800-34206800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:34197000-34207400	Weak transcription	HSMMtube	muscle
19	chr11:34197400-34203600	Weak transcription	Right Ventricle	heart
20	chr11:34197400-34204400	Enhancers	GM12878-XiMat	blood
21	chr11:34197400-34205000	Weak transcription	Liver	Liver
22	chr11:34197800-34205200	Enhancers	Brain Hippocampus Middle	brain
23	chr11:34198000-34202200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:34198000-34203800	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:34198000-34204000	Enhancers	Brain Anterior Caudate	brain
26	chr11:34198000-34204000	Enhancers	Brain Substantia Nigra	brain
27	chr11:34198600-34207000	Weak transcription	NHEK	skin
28	chr11:34198800-34207000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:34199200-34209800	Weak transcription	A549	lung
30	chr11:34199600-34202800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:34199600-34206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:34199800-34206000	Weak transcription	Brain Germinal Matrix	brain
33	chr11:34200800-34202400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr11:34200800-34203200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:34200800-34203400	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr11:34200800-34203400	Enhancers	Fetal Stomach	stomach
37	chr11:34200800-34203600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:34201000-34202400	Enhancers	Fetal Lung	lung
39	chr11:34201000-34203000	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:34201000-34204000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:34201200-34202200	Enhancers	HMEC	breast
42	chr11:34201200-34202600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:34201400-34202200	Enhancers	Colon Smooth Muscle	Colon
44	chr11:34201600-34202200	Enhancers	Osteobl	bone
45	chr11:34201600-34203000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr11:34201800-34202400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:34201800-34202400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr11:34201800-34202600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:34201800-34202600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:34201800-34202800	Enhancers	Fetal Thymus	thymus

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