Variant report

Variant	rs2982608
Chromosome Location	chr11:34190762-34190763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
2	chr11:34186094..34192097-chr11:34378097..34382585,10	MCF-7	breast:
3	chr11:34186684..34189274-chr11:34189762..34192560,2	MCF-7	breast:
4	chr11:34187334..34191068-chr11:34191112..34197188,7	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10836157	1.00[ASN][1000 genomes]
rs11032535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11032537	0.90[ASN][1000 genomes]
rs1321017	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1321018	0.92[ASN][1000 genomes]
rs1321019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2473918	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2955934	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2955935	1.00[ASN][1000 genomes]
rs2957492	0.94[ASN][1000 genomes]
rs2982606	0.83[JPT][hapmap];1.00[ASN][1000 genomes]
rs2982607	1.00[ASN][1000 genomes]
rs34427038	0.84[ASN][1000 genomes]
rs59698692	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7102200	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7120934	1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs7121122	0.94[ASN][1000 genomes]
rs7121208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7121259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7124122	0.94[ASN][1000 genomes]
rs7937404	0.94[ASN][1000 genomes]
rs7950979	0.94[ASN][1000 genomes]
rs910256	0.86[JPT][hapmap]
rs910257	0.83[CHD][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:34174400-34190800	Weak transcription	Colonic Mucosa	Colon
4	chr11:34174600-34193400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:34176800-34195600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:34177000-34196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:34177400-34195400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:34177600-34194600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:34177600-34196200	Weak transcription	Primary T cells from cord blood	blood
10	chr11:34177800-34195800	Weak transcription	Spleen	Spleen
11	chr11:34177800-34196000	Weak transcription	GM12878-XiMat	blood
12	chr11:34178800-34192600	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:34178800-34195200	Weak transcription	Hela-S3	cervix
14	chr11:34179200-34191000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:34179200-34195400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:34179400-34196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:34179600-34193600	Strong transcription	Liver	Liver
18	chr11:34180000-34195200	Strong transcription	HepG2	liver
19	chr11:34180600-34195400	Weak transcription	Fetal Thymus	thymus
20	chr11:34181400-34195400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:34182200-34195400	Weak transcription	Osteobl	bone
22	chr11:34182400-34191600	Weak transcription	Left Ventricle	heart
23	chr11:34182800-34196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:34183000-34191800	Strong transcription	Right Ventricle	heart
25	chr11:34183000-34195200	Strong transcription	Stomach Smooth Muscle	stomach
26	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
27	chr11:34183800-34194400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:34184200-34191800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:34184200-34195400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:34184200-34195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:34184200-34195800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:34184400-34195400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:34184600-34196000	Weak transcription	Gastric	stomach
34	chr11:34184800-34195400	Weak transcription	Brain Anterior Caudate	brain
35	chr11:34185000-34195400	Weak transcription	Brain Angular Gyrus	brain
36	chr11:34185200-34190800	Weak transcription	HSMM	muscle
37	chr11:34186800-34191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:34187000-34195400	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:34188000-34190800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:34188000-34191600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:34188000-34192600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:34188000-34192800	Strong transcription	Aorta	Aorta
43	chr11:34188200-34191800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:34188400-34195000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:34188400-34196200	Weak transcription	Esophagus	oesophagus
46	chr11:34188800-34191400	Weak transcription	Brain Substantia Nigra	brain
47	chr11:34189200-34191800	Weak transcription	Placenta	Placenta
48	chr11:34189200-34195200	Weak transcription	Brain Germinal Matrix	brain
49	chr11:34189400-34192000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:34189600-34192000	Weak transcription	Duodenum Mucosa	Duodenum

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