Variant report

Variant	rs59888177
Chromosome Location	chr5:124665760-124665761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11743821	0.86[AMR][1000 genomes]
rs1400871	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1400873	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1444652	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1822758	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2678184	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55751073	0.82[AMR][1000 genomes]
rs6873529	0.82[AMR][1000 genomes]
rs7707387	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7707447	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7714101	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124659800-124667400	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:124659800-124667600	Weak transcription	Fetal Brain Male	brain
4	chr5:124661800-124666200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:124661800-124675800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124662200-124667200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:124663400-124672200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:124663800-124666400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:124663800-124666800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:124663800-124667000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:124663800-124667000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:124663800-124672200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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