Variant report

Variant	rs11743821
Chromosome Location	chr5:124660815-124660816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1017470	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10519810	0.88[ASN][1000 genomes]
rs10519815	0.99[ASN][1000 genomes]
rs11241800	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747346	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12519367	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12519412	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12519475	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12522070	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12659286	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1400871	0.82[AMR][1000 genomes]
rs1400873	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1444652	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1562124	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17152620	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17152634	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1822758	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2408381	0.92[ASN][1000 genomes]
rs2678184	0.86[AMR][1000 genomes]
rs55751073	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58587494	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59888177	0.86[AMR][1000 genomes]
rs61536888	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67482921	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68179470	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6873529	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7707387	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7707447	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7714101	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124653600-124661400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:124653600-124661600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:124653800-124661400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:124654200-124661800	Weak transcription	Brain Germinal Matrix	brain
6	chr5:124659400-124661200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124659400-124661400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:124659600-124661600	Weak transcription	Brain Anterior Caudate	brain
9	chr5:124659600-124661600	Weak transcription	HSMMtube	muscle
10	chr5:124659800-124661400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:124659800-124661400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:124659800-124661600	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:124659800-124661600	Weak transcription	Stomach Mucosa	stomach
14	chr5:124659800-124667400	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:124659800-124667600	Weak transcription	Fetal Brain Male	brain
16	chr5:124660000-124661200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:124660000-124661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:124660000-124661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:124660000-124661600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:124660000-124661600	Weak transcription	NHDF-Ad	bronchial
21	chr5:124660000-124661600	Weak transcription	NHLF	lung
22	chr5:124660000-124661800	Weak transcription	Fetal Lung	lung

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