Variant report

Variant	rs7707387
Chromosome Location	chr5:124667524-124667525
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1017470	0.82[AMR][1000 genomes]
rs11743821	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11747346	0.81[AMR][1000 genomes]
rs1400871	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1400873	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1444652	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17152634	0.84[AMR][1000 genomes]
rs1822758	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2589379	0.80[AMR][1000 genomes]
rs2678184	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55751073	0.86[AMR][1000 genomes]
rs59888177	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61536888	0.81[AMR][1000 genomes]
rs6873529	0.86[AMR][1000 genomes]
rs7707447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712739	0.80[AMR][1000 genomes]
rs7714101	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124659800-124667600	Weak transcription	Fetal Brain Male	brain
3	chr5:124661800-124675800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:124663400-124672200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:124663800-124672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:124666200-124668000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:124666400-124669200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:124667000-124667600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:124667000-124667600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:124667000-124668400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:124667200-124668600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:124667200-124672400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:124667400-124667600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:124667400-124668200	Enhancers	Brain Hippocampus Middle	brain
15	chr5:124667400-124668600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:124667400-124668800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:124667400-124672400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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