Variant report

Variant	rs17152634
Chromosome Location	chr5:124652315-124652316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1017470	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519810	0.87[ASN][1000 genomes]
rs10519815	0.90[ASN][1000 genomes]
rs11241800	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11743821	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747346	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12519367	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12519412	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12519475	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12522070	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12659286	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1400873	0.81[AMR][1000 genomes]
rs1444652	0.81[AMR][1000 genomes]
rs1562124	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17152620	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408381	0.97[ASN][1000 genomes]
rs55751073	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58587494	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61536888	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67482921	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68179470	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873529	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7707387	0.84[AMR][1000 genomes]
rs7707447	0.84[AMR][1000 genomes]
rs7714101	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124650000-124652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:124650600-124655200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:124650800-124652400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:124650800-124653000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:124650800-124654400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:124651000-124653000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:124651200-124652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:124651800-124652400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:124651800-124652600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:124651800-124653400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:124651800-124653600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:124652000-124652400	Enhancers	A549	lung
14	chr5:124652000-124652800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:124652000-124652800	Enhancers	Osteobl	bone
16	chr5:124652000-124653800	Enhancers	Fetal Brain Male	brain
17	chr5:124652200-124652600	Weak transcription	Fetal Intestine Large	intestine
18	chr5:124652200-124653000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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