Variant report

Variant	rs12659286
Chromosome Location	chr5:124647808-124647809
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1017470	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10519810	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10519815	0.89[ASN][1000 genomes]
rs11241800	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743821	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747346	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519367	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12519412	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12519475	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12522070	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1562124	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17152620	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17152634	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2408381	0.96[ASN][1000 genomes]
rs55751073	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58587494	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61536888	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67482921	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68179470	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873529	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124635200-124648000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124645800-124648200	Enhancers	HUVEC	blood vessel
3	chr5:124646200-124648200	Enhancers	NHEK	skin
4	chr5:124646200-124648400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:124646200-124648400	Enhancers	HMEC	breast
6	chr5:124646200-124648400	Enhancers	HSMM	muscle
7	chr5:124646200-124648600	Enhancers	NHDF-Ad	bronchial
8	chr5:124646600-124648200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:124646600-124648200	Enhancers	NH-A	brain
10	chr5:124646600-124648400	Enhancers	Osteobl	bone
11	chr5:124646800-124648600	Enhancers	NHLF	lung
12	chr5:124647000-124648000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:124647000-124648200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:124647200-124649200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:124647400-124648400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:124647600-124648000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:124647600-124648000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:124647600-124648800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:124647800-124648200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:124647800-124648200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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