Variant report

Variant	rs17152620
Chromosome Location	chr5:124636443-124636444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1017470	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10519810	0.92[ASN][1000 genomes]
rs10519815	0.88[ASN][1000 genomes]
rs11241800	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11743821	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11747346	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12519367	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12519412	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12519475	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12522070	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12659286	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1562124	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152634	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2408381	0.91[ASN][1000 genomes]
rs55751073	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58587494	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61536888	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67482921	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68179470	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6873529	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1034696	chr5:124616571-124654771	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124630800-124637200	Weak transcription	Fetal Brain Female	brain
2	chr5:124631400-124639400	Weak transcription	Fetal Kidney	kidney
3	chr5:124634400-124639400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:124634400-124646200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:124634600-124637400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:124634600-124638600	Weak transcription	Psoas Muscle	Psoas
7	chr5:124634800-124637000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:124634800-124637200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:124634800-124637400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:124634800-124637400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:124635000-124637400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:124635000-124637400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:124635000-124637600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:124635000-124646800	Weak transcription	HSMMtube	muscle
15	chr5:124635200-124637600	Weak transcription	Brain Germinal Matrix	brain
16	chr5:124635200-124648000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:124635600-124637400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:124636000-124636600	Enhancers	Fetal Brain Male	brain

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