Variant report

Variant	rs10519815
Chromosome Location	chr5:124660883-124660884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1017470	0.90[ASN][1000 genomes]
rs10519810	0.87[ASN][1000 genomes]
rs11241800	0.89[ASN][1000 genomes]
rs11743821	0.99[ASN][1000 genomes]
rs11747346	0.89[ASN][1000 genomes]
rs12519367	0.87[ASN][1000 genomes]
rs12519475	0.87[ASN][1000 genomes]
rs12522070	0.88[ASN][1000 genomes]
rs12659286	0.89[ASN][1000 genomes]
rs1562124	0.88[ASN][1000 genomes]
rs17152620	0.88[ASN][1000 genomes]
rs17152634	0.90[ASN][1000 genomes]
rs2408381	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55751073	0.92[ASN][1000 genomes]
rs61536888	0.90[ASN][1000 genomes]
rs67482921	0.88[ASN][1000 genomes]
rs68179470	0.89[ASN][1000 genomes]
rs6873529	0.92[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs10519815	PHAX	cis	cerebellum	SCAN
rs10519815	CSNK1G3	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124653600-124661400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:124653600-124661600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:124653800-124661400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:124654200-124661800	Weak transcription	Brain Germinal Matrix	brain
6	chr5:124659400-124661200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124659400-124661400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:124659600-124661600	Weak transcription	Brain Anterior Caudate	brain
9	chr5:124659600-124661600	Weak transcription	HSMMtube	muscle
10	chr5:124659800-124661400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:124659800-124661400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:124659800-124661600	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:124659800-124661600	Weak transcription	Stomach Mucosa	stomach
14	chr5:124659800-124667400	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:124659800-124667600	Weak transcription	Fetal Brain Male	brain
16	chr5:124660000-124661200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:124660000-124661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:124660000-124661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:124660000-124661600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:124660000-124661600	Weak transcription	NHDF-Ad	bronchial
21	chr5:124660000-124661600	Weak transcription	NHLF	lung
22	chr5:124660000-124661800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links