Variant report

Variant	rs59940449
Chromosome Location	chr11:74970308-74970309
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17133858	0.87[EUR][1000 genomes]
rs41298117	0.87[EUR][1000 genomes]
rs4362167	0.87[EUR][1000 genomes]
rs56958854	0.87[EUR][1000 genomes]
rs57277559	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57654883	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59390914	0.87[EUR][1000 genomes]
rs60893479	0.87[EUR][1000 genomes]
rs61265142	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67495709	0.87[EUR][1000 genomes]
rs67947456	0.87[EUR][1000 genomes]
rs72998587	0.87[EUR][1000 genomes]
rs72998590	0.87[EUR][1000 genomes]
rs72998593	0.83[EUR][1000 genomes]
rs72998594	0.87[EUR][1000 genomes]
rs72998602	0.87[EUR][1000 genomes]
rs7927925	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74969200-74976600	Weak transcription	Ovary	ovary
2	chr11:74969400-74972000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr11:74969600-74971200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:74969800-74972000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr11:74969800-74973800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr11:74969800-74976000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:74969800-74976000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:74969800-74976200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:74970000-74971600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:74970000-74976000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr11:74970200-74970600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:74970200-74971000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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