Variant report
| Variant | rs67947456 |
|---|---|
| Chromosome Location | chr11:74960637-74960638 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:8 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:74734190..74735729-chr11:74958349..74960779,2 | K562 | blood: | |
| 2 | chr11:74640173..74641444-chr11:74959409..74960765,6 | K562 | blood: | |
| 3 | chr11:74733636..74734614-chr11:74959392..74960654,8 | K562 | blood: | |
| 4 | chr11:74640435..74641917-chr11:74959346..74960996,13 | MCF-7 | breast: | |
| 5 | chr11:74915763..74916910-chr11:74959359..74960694,5 | MCF-7 | breast: | |
| 6 | chr11:74951677..74954927-chr11:74958323..74960938,5 | K562 | blood: | |
| 7 | chr11:74959661..74961897-chr11:74963344..74965921,3 | K562 | blood: | |
| 8 | chr11:74733532..74734794-chr11:74959383..74960736,14 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255136 | Chromatin interaction |
| ENSG00000261594 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12721494 | 0.84[EUR][1000 genomes] |
| rs17133815 | 0.92[EUR][1000 genomes] |
| rs17133831 | 0.82[EUR][1000 genomes] |
| rs17133844 | 0.89[EUR][1000 genomes] |
| rs17133848 | 0.89[EUR][1000 genomes] |
| rs17133858 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1801906 | 0.82[EUR][1000 genomes] |
| rs2035208 | 0.82[EUR][1000 genomes] |
| rs34827001 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41298117 | 1.00[EUR][1000 genomes] |
| rs41298121 | 0.82[EUR][1000 genomes] |
| rs4362167 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56738638 | 0.82[EUR][1000 genomes] |
| rs56958854 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57277559 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57279023 | 0.82[EUR][1000 genomes] |
| rs57654883 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59390914 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59940449 | 0.87[EUR][1000 genomes] |
| rs60893479 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61265142 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67495709 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72998568 | 0.92[EUR][1000 genomes] |
| rs72998587 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72998590 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72998593 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72998594 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72998602 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73488764 | 0.82[EUR][1000 genomes] |
| rs7924924 | 0.82[EUR][1000 genomes] |
| rs7927925 | 1.00[EUR][1000 genomes] |
| rs7951787 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049887 | chr11:74937977-75040438 | Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036292 | chr11:74937977-75059496 | Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 65 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041640 | chr11:74945824-75174688 | Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 94 gene(s) | inside rSNPs | diseases |
| 4 | nsv832211 | chr11:74945839-75106125 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 66 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
