Variant report

Variant	rs17133815
Chromosome Location	chr11:74913756-74913757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74904464..74906509-chr11:74913537..74915043,2	MCF-7	breast:
2	chr11:74851432..74851970-chr11:74913042..74913904,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1109407	1.00[MEX][hapmap]
rs11236363	1.00[MEX][hapmap]
rs11236364	1.00[MEX][hapmap]
rs1676876	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17133742	1.00[MEX][hapmap]
rs17133809	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs17133838	0.85[CEU][hapmap]
rs17133841	0.85[CEU][hapmap]
rs17133844	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs17133848	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs17133858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2035208	0.85[CEU][hapmap]
rs2306167	0.93[ASN][1000 genomes]
rs3907207	0.85[CEU][hapmap]
rs41298117	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4362167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs56958854	0.92[EUR][1000 genomes]
rs57277559	0.92[EUR][1000 genomes]
rs57654883	0.92[EUR][1000 genomes]
rs58941788	1.00[ASN][1000 genomes]
rs59390914	0.92[EUR][1000 genomes]
rs60893479	0.92[EUR][1000 genomes]
rs61265142	0.92[EUR][1000 genomes]
rs61555831	0.93[ASN][1000 genomes]
rs67495709	0.92[EUR][1000 genomes]
rs67947456	0.92[EUR][1000 genomes]
rs7110250	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7118873	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs72998556	0.93[ASN][1000 genomes]
rs72998568	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998587	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72998590	0.92[EUR][1000 genomes]
rs72998593	0.87[EUR][1000 genomes]
rs72998594	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72998602	0.92[EUR][1000 genomes]
rs765823	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs765824	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs7927925	0.92[EUR][1000 genomes]
rs7951787	0.85[CEU][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
2	chr11:74892600-74914200	Strong transcription	Duodenum Mucosa	Duodenum
3	chr11:74902800-74913800	Strong transcription	Fetal Intestine Large	intestine
4	chr11:74903000-74914200	Strong transcription	Fetal Intestine Small	intestine
5	chr11:74903000-74915800	Weak transcription	Stomach Mucosa	stomach
6	chr11:74905000-74915400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:74906200-74915600	Weak transcription	Pancreas	Pancrea
8	chr11:74906600-74915800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:74907200-74916000	Weak transcription	Brain Substantia Nigra	brain
10	chr11:74907800-74914200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:74907800-74918000	Weak transcription	Right Atrium	heart
12	chr11:74908200-74915800	Strong transcription	Lung	lung
13	chr11:74909000-74913800	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:74909800-74915800	Weak transcription	Colonic Mucosa	Colon
15	chr11:74910400-74914000	Weak transcription	Placenta	Placenta
16	chr11:74911000-74914000	Genic enhancers	Liver	Liver
17	chr11:74911200-74914200	Weak transcription	Gastric	stomach
18	chr11:74911200-74915800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:74911400-74914000	Weak transcription	HepG2	liver
20	chr11:74911400-74915200	Weak transcription	Adipose Nuclei	Adipose
21	chr11:74911400-74915800	Weak transcription	Right Ventricle	heart
22	chr11:74911400-74919800	Weak transcription	Spleen	Spleen
23	chr11:74911600-74915400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:74911800-74915400	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:74912000-74916800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:74912400-74914600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:74912400-74914600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:74912800-74914000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:74913400-74915600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:74913600-74914200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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