Variant report

Variant	rs17133809
Chromosome Location	chr11:74903676-74903677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1109407	1.00[MEX][hapmap]
rs11236363	1.00[MEX][hapmap]
rs11236364	1.00[MEX][hapmap]
rs11823030	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12289885	0.82[CEU][hapmap]
rs1676876	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17133742	1.00[MEX][hapmap]
rs17133760	0.82[CEU][hapmap]
rs17133815	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs17133858	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2306167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306168	0.82[EUR][1000 genomes]
rs3781725	0.82[EUR][1000 genomes]
rs3824904	0.82[CEU][hapmap]
rs41298117	0.93[ASN][1000 genomes]
rs4362167	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs58941788	0.93[ASN][1000 genomes]
rs61555831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118873	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs72998556	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998568	0.93[ASN][1000 genomes]
rs73488755	0.82[EUR][1000 genomes]
rs765823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74876200-74906200	Weak transcription	Spleen	Spleen
2	chr11:74880800-74911000	Weak transcription	Gastric	stomach
3	chr11:74881200-74905600	Weak transcription	Pancreas	Pancrea
4	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
5	chr11:74892600-74914200	Strong transcription	Duodenum Mucosa	Duodenum
6	chr11:74894600-74904200	Enhancers	Placenta	Placenta
7	chr11:74898400-74907000	Genic enhancers	Liver	Liver
8	chr11:74898600-74904000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:74900200-74907800	Enhancers	Fetal Muscle Trunk	muscle
10	chr11:74900200-74908200	Enhancers	Fetal Muscle Leg	muscle
11	chr11:74902400-74904200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:74902400-74905800	Weak transcription	Fetal Brain Male	brain
13	chr11:74902400-74905800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:74902400-74906000	Weak transcription	Brain Substantia Nigra	brain
15	chr11:74902600-74904000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:74902600-74904200	Weak transcription	Lung	lung
17	chr11:74902600-74904200	Weak transcription	Right Ventricle	heart
18	chr11:74902600-74904600	Weak transcription	Left Ventricle	heart
19	chr11:74902600-74904800	Weak transcription	Right Atrium	heart
20	chr11:74902600-74905000	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:74902800-74906000	Weak transcription	Brain Germinal Matrix	brain
22	chr11:74902800-74910800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:74902800-74913800	Strong transcription	Fetal Intestine Large	intestine
24	chr11:74903000-74904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:74903000-74905000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:74903000-74905000	Weak transcription	Esophagus	oesophagus
27	chr11:74903000-74905000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:74903000-74905400	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:74903000-74905400	Weak transcription	Fetal Thymus	thymus
30	chr11:74903000-74906200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:74903000-74906400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:74903000-74914200	Strong transcription	Fetal Intestine Small	intestine
33	chr11:74903000-74915800	Weak transcription	Stomach Mucosa	stomach
34	chr11:74903200-74904200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:74903200-74904600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr11:74903200-74904800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:74903200-74909000	Weak transcription	HepG2	liver
38	chr11:74903200-74912800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:74903400-74903800	Weak transcription	Adipose Nuclei	Adipose
40	chr11:74903400-74904200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:74903600-74904200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:74903600-74904200	Weak transcription	Colonic Mucosa	Colon
43	chr11:74903600-74905000	Weak transcription	Fetal Stomach	stomach

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