Variant report

Variant	rs11823030
Chromosome Location	chr11:74907204-74907205
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:74907051-74907368	IMR90	lung:	n/a	n/a
2	CEBPB	chr11:74907190-74907249	K562	blood:	n/a	n/a
3	RCOR1	chr11:74907070-74907298	K562	blood:	n/a	n/a

Variant related genes	Relation type
SLCO2B1	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17133809	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs17133831	0.84[ASN][1000 genomes]
rs17133838	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs17133841	0.85[CEU][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs17133844	0.85[CEU][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs17133848	0.85[CEU][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1801906	0.85[ASN][1000 genomes]
rs2035208	0.85[CEU][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2282600	0.82[JPT][hapmap]
rs2306167	0.82[EUR][1000 genomes]
rs2306168	1.00[ASW][hapmap];0.85[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3781725	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781726	0.89[ASN][1000 genomes]
rs3824904	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3907207	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs41298121	0.85[ASN][1000 genomes]
rs5006027	0.93[JPT][hapmap]
rs56738638	0.84[ASN][1000 genomes]
rs57279023	0.84[ASN][1000 genomes]
rs61555831	0.82[EUR][1000 genomes]
rs7110250	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs73488755	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73488764	0.84[ASN][1000 genomes]
rs765823	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs765824	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs7924924	0.84[ASN][1000 genomes]
rs7951787	0.85[CEU][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74880800-74911000	Weak transcription	Gastric	stomach
2	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
3	chr11:74892600-74914200	Strong transcription	Duodenum Mucosa	Duodenum
4	chr11:74900200-74907800	Enhancers	Fetal Muscle Trunk	muscle
5	chr11:74900200-74908200	Enhancers	Fetal Muscle Leg	muscle
6	chr11:74902800-74910800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:74902800-74913800	Strong transcription	Fetal Intestine Large	intestine
8	chr11:74903000-74914200	Strong transcription	Fetal Intestine Small	intestine
9	chr11:74903000-74915800	Weak transcription	Stomach Mucosa	stomach
10	chr11:74903200-74909000	Weak transcription	HepG2	liver
11	chr11:74903200-74912800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:74903800-74907800	Enhancers	Adipose Nuclei	Adipose
13	chr11:74904000-74908000	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:74904200-74911800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:74904400-74907400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:74904600-74908000	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr11:74904600-74910200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:74904800-74907800	Enhancers	Right Atrium	heart
19	chr11:74905000-74907400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:74905000-74907600	Enhancers	Stomach Smooth Muscle	stomach
21	chr11:74905000-74915400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:74905200-74907400	Enhancers	Lung	lung
23	chr11:74906000-74907600	Enhancers	Brain Germinal Matrix	brain
24	chr11:74906200-74907800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:74906200-74915600	Weak transcription	Pancreas	Pancrea
26	chr11:74906600-74909400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:74906600-74910800	Weak transcription	Brain Anterior Caudate	brain
28	chr11:74906600-74911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:74906600-74915800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:74906800-74907600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:74906800-74907600	Genic enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:74906800-74908200	Weak transcription	Fetal Thymus	thymus
33	chr11:74906800-74908600	Weak transcription	Esophagus	oesophagus
34	chr11:74907000-74907400	Weak transcription	Right Ventricle	heart
35	chr11:74907000-74908800	Enhancers	Fetal Stomach	stomach
36	chr11:74907000-74909800	Strong transcription	Colonic Mucosa	Colon
37	chr11:74907000-74910600	Weak transcription	Left Ventricle	heart
38	chr11:74907000-74910600	Weak transcription	Spleen	Spleen
39	chr11:74907000-74911000	Strong transcription	Liver	Liver
40	chr11:74907200-74907600	Enhancers	Fetal Lung	lung
41	chr11:74907200-74910000	Genic enhancers	Placenta	Placenta
42	chr11:74907200-74916000	Weak transcription	Brain Substantia Nigra	brain

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