Variant report

Variant	rs3824904
Chromosome Location	chr11:74905735-74905736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:74905159-74906541	MCF10A-Er-Src	breast:	n/a	chr11:74906407-74906419 chr11:74905251-74905258 chr11:74905368-74905377 chr11:74905727-74905734 chr11:74905365-74905379 chr11:74905539-74905551 chr11:74905337-74905345 chr11:74905367-74905376 chr11:74906321-74906329 chr11:74905366-74905377

No.	Distal block	Cell Line	Cell type
1	chr11:74904307..74907099-chr11:74907499..74909740,2	MCF-7	breast:
2	chr11:74904166..74906020-chr11:74916762..74918875,2	K562	blood:
3	chr11:74904464..74906509-chr11:74913537..74915043,2	MCF-7	breast:

Variant related genes	Relation type
SLCO2B1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11823030	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17133809	0.82[CEU][hapmap]
rs17133831	0.81[ASN][1000 genomes]
rs17133838	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs17133841	0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs17133844	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17133848	0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1801906	0.82[ASN][1000 genomes]
rs2035208	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2282600	0.86[JPT][hapmap]
rs2306168	0.85[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3781725	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781726	0.80[ASN][1000 genomes]
rs3907207	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs41298121	0.82[ASN][1000 genomes]
rs5006027	1.00[JPT][hapmap]
rs56738638	0.81[ASN][1000 genomes]
rs57279023	0.81[ASN][1000 genomes]
rs7110250	0.82[CEU][hapmap]
rs73488755	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73488764	0.81[ASN][1000 genomes]
rs765823	0.82[CEU][hapmap]
rs765824	0.82[CEU][hapmap]
rs7924924	0.81[ASN][1000 genomes]
rs7951787	0.85[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74876200-74906200	Weak transcription	Spleen	Spleen
2	chr11:74880800-74911000	Weak transcription	Gastric	stomach
3	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
4	chr11:74892600-74914200	Strong transcription	Duodenum Mucosa	Duodenum
5	chr11:74898400-74907000	Genic enhancers	Liver	Liver
6	chr11:74900200-74907800	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:74900200-74908200	Enhancers	Fetal Muscle Leg	muscle
8	chr11:74902400-74905800	Weak transcription	Fetal Brain Male	brain
9	chr11:74902400-74905800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:74902400-74906000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:74902800-74906000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:74902800-74910800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:74902800-74913800	Strong transcription	Fetal Intestine Large	intestine
14	chr11:74903000-74906200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:74903000-74906400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:74903000-74914200	Strong transcription	Fetal Intestine Small	intestine
17	chr11:74903000-74915800	Weak transcription	Stomach Mucosa	stomach
18	chr11:74903200-74909000	Weak transcription	HepG2	liver
19	chr11:74903200-74912800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:74903800-74907800	Enhancers	Adipose Nuclei	Adipose
21	chr11:74904000-74908000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:74904200-74907000	Enhancers	Right Ventricle	heart
23	chr11:74904200-74911800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:74904400-74907400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:74904600-74908000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr11:74904600-74910200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:74904800-74906000	Weak transcription	Colonic Mucosa	Colon
28	chr11:74904800-74906600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr11:74904800-74907800	Enhancers	Right Atrium	heart
30	chr11:74905000-74906600	Enhancers	Colon Smooth Muscle	Colon
31	chr11:74905000-74906600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr11:74905000-74906600	Enhancers	Fetal Stomach	stomach
33	chr11:74905000-74906800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:74905000-74907000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:74905000-74907200	Enhancers	Placenta	Placenta
36	chr11:74905000-74907400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:74905000-74907600	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:74905000-74915400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:74905200-74906000	Weak transcription	Left Ventricle	heart
40	chr11:74905200-74907400	Enhancers	Lung	lung
41	chr11:74905400-74906200	Weak transcription	Esophagus	oesophagus
42	chr11:74905400-74906200	Enhancers	Fetal Thymus	thymus
43	chr11:74905400-74906800	Enhancers	Fetal Heart	heart
44	chr11:74905400-74907000	Enhancers	Brain Hippocampus Middle	brain
45	chr11:74905400-74907000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr11:74905600-74906200	Enhancers	Pancreas	Pancrea
47	chr11:74905600-74906600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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