Variant report

Variant	rs41298121
Chromosome Location	chr11:74916847-74916848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74915702..74917024-chr11:74959078..74959858,3	K562	blood:
2	chr11:74854818..74856886-chr11:74915338..74916882,2	K562	blood:
3	chr11:74910975..74912649-chr11:74914593..74917010,2	K562	blood:
4	chr11:74904166..74906020-chr11:74916762..74918875,2	K562	blood:
5	chr11:74854240..74856798-chr11:74915145..74916958,23	MCF-7	breast:
6	chr11:74850929..74852986-chr11:74916077..74917592,2	MCF-7	breast:
7	chr11:74915763..74916910-chr11:74959359..74960694,5	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARRB1-1	chr11:74915055-74917254	NONHSAT023082
2	lnc-NEU3-3	chr11:74914426-74917299	NONHSAT023081

No data

Variant related genes	Relation type
ENSG00000255395	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11823030	0.85[ASN][1000 genomes]
rs17133818	0.88[ASN][1000 genomes]
rs17133831	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17133844	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17133848	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17133858	0.82[EUR][1000 genomes]
rs1801906	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035208	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3781725	0.85[ASN][1000 genomes]
rs3781727	0.88[ASN][1000 genomes]
rs3824904	0.82[ASN][1000 genomes]
rs41298117	0.82[EUR][1000 genomes]
rs4362167	0.82[EUR][1000 genomes]
rs56253315	0.91[ASN][1000 genomes]
rs56738638	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56958854	0.82[EUR][1000 genomes]
rs57277559	0.82[EUR][1000 genomes]
rs57279023	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57654883	0.82[EUR][1000 genomes]
rs58769063	0.87[ASN][1000 genomes]
rs59390914	0.82[EUR][1000 genomes]
rs60893479	0.82[EUR][1000 genomes]
rs61265142	0.82[EUR][1000 genomes]
rs61443691	0.87[ASN][1000 genomes]
rs67495709	0.82[EUR][1000 genomes]
rs67947456	0.82[EUR][1000 genomes]
rs72998587	0.82[EUR][1000 genomes]
rs72998590	0.82[EUR][1000 genomes]
rs72998594	0.82[EUR][1000 genomes]
rs72998602	0.82[EUR][1000 genomes]
rs73488755	0.84[ASN][1000 genomes]
rs73488760	0.87[ASN][1000 genomes]
rs73488764	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924924	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927925	0.82[EUR][1000 genomes]
rs7951787	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74907800-74918000	Weak transcription	Right Atrium	heart
2	chr11:74911400-74919800	Weak transcription	Spleen	Spleen
3	chr11:74913800-74918000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:74914200-74917200	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:74914400-74917200	Enhancers	Fetal Intestine Large	intestine
6	chr11:74915800-74919600	Weak transcription	Lung	lung
7	chr11:74916000-74918600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74916000-74919600	Weak transcription	Pancreas	Pancrea
9	chr11:74916000-74920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:74916400-74918600	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:74916400-74919200	Weak transcription	K562	blood
12	chr11:74916800-74919600	Weak transcription	Liver	Liver

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