Variant report

Variant	rs56253315
Chromosome Location	chr11:74947752-74947753
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17133818	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17133831	0.92[ASN][1000 genomes]
rs17133844	0.93[ASN][1000 genomes]
rs17133848	0.93[ASN][1000 genomes]
rs1801906	0.91[ASN][1000 genomes]
rs2035208	0.92[ASN][1000 genomes]
rs2282600	0.83[ASN][1000 genomes]
rs3781726	0.82[AMR][1000 genomes]
rs3781727	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs41298121	0.91[ASN][1000 genomes]
rs56738638	0.92[ASN][1000 genomes]
rs57279023	0.92[ASN][1000 genomes]
rs58769063	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61443691	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73488760	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73488764	0.92[ASN][1000 genomes]
rs7924924	0.92[ASN][1000 genomes]
rs7951787	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74945400-74951600	Weak transcription	Ovary	ovary
2	chr11:74946600-74948200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:74946800-74947800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:74947000-74948000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:74947000-74948000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:74947200-74948600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:74947400-74950200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:74947600-74950200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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