Variant report

Variant	rs17133844
Chromosome Location	chr11:74940833-74940834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74940724..74942990-chr11:74944067..74946859,2	K562	blood:
2	chr11:74935358..74937111-chr11:74939977..74942322,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11823030	0.85[CEU][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1676876	0.85[CEU][hapmap]
rs17133815	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs17133818	0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs17133831	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17133838	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs17133841	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs17133848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133858	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs1801906	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2035208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279129	0.83[CHB][hapmap]
rs2279130	0.83[CHB][hapmap]
rs2282600	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs3781725	0.84[ASN][1000 genomes]
rs3781727	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs3824904	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3907207	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs41298117	0.89[EUR][1000 genomes]
rs41298121	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4362167	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs5006027	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs56253315	0.93[ASN][1000 genomes]
rs56738638	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56958854	0.89[EUR][1000 genomes]
rs57277559	0.89[EUR][1000 genomes]
rs57279023	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57654883	0.89[EUR][1000 genomes]
rs58769063	0.88[ASN][1000 genomes]
rs59390914	0.89[EUR][1000 genomes]
rs60893479	0.89[EUR][1000 genomes]
rs61265142	0.89[EUR][1000 genomes]
rs61443691	0.88[ASN][1000 genomes]
rs67495709	0.89[EUR][1000 genomes]
rs67947456	0.89[EUR][1000 genomes]
rs72998568	0.81[EUR][1000 genomes]
rs72998587	0.89[EUR][1000 genomes]
rs72998590	0.89[EUR][1000 genomes]
rs72998593	0.85[EUR][1000 genomes]
rs72998594	0.89[EUR][1000 genomes]
rs72998602	0.89[EUR][1000 genomes]
rs73488755	0.82[ASN][1000 genomes]
rs73488760	0.88[ASN][1000 genomes]
rs73488764	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924924	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7927925	0.89[EUR][1000 genomes]
rs7951787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74935800-74946600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:74940600-74941400	Enhancers	Fetal Brain Female	brain
3	chr11:74940800-74941000	Enhancers	Brain Hippocampus Middle	brain
4	chr11:74940800-74941000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:74940800-74941600	Enhancers	Brain Germinal Matrix	brain
6	chr11:74940800-74947200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links