Variant report

Variant	rs61265142
Chromosome Location	chr11:74971104-74971105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:74970659-74972996	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:74970982-74972170	HepG2	liver:	n/a	n/a
3	POLR2A	chr11:74970579-74972116	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr11:74970661-74975531	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr11:74970875-74972269	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr11:74970751-74976821	K562	blood:	n/a	n/a
7	POLR2A	chr11:74970936-74976112	PANC-1	pancreas:	n/a	n/a
8	SIN3AK20	chr11:74970845-74971875	PANC-1	pancreas:	n/a	n/a
9	POLR2A	chr11:74970803-74971110	K562	blood:	n/a	n/a
10	POLR2A	chr11:74970589-74976993	PANC-1	pancreas:	n/a	n/a
11	POLR2A	chr11:74971046-74971128	MCF-7	breast:	n/a	n/a
12	POLR2A	chr11:74971064-74971343	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr11:74970752-74976811	K562	blood:	n/a	n/a
14	POLR2A	chr11:74970887-74974659	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000254963	TF binding region
ENSG00000254429	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12721494	0.84[EUR][1000 genomes]
rs17133815	0.92[EUR][1000 genomes]
rs17133831	0.82[EUR][1000 genomes]
rs17133844	0.89[EUR][1000 genomes]
rs17133848	0.89[EUR][1000 genomes]
rs17133858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801906	0.82[EUR][1000 genomes]
rs2035208	0.82[EUR][1000 genomes]
rs34827001	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41298117	1.00[EUR][1000 genomes]
rs41298121	0.82[EUR][1000 genomes]
rs4362167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56738638	0.82[EUR][1000 genomes]
rs56958854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57277559	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57279023	0.82[EUR][1000 genomes]
rs57654883	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59390914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59940449	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60893479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67495709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67947456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998568	0.92[EUR][1000 genomes]
rs72998587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998590	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998593	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488764	0.82[EUR][1000 genomes]
rs7924924	0.82[EUR][1000 genomes]
rs7927925	1.00[EUR][1000 genomes]
rs7951787	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74969200-74976600	Weak transcription	Ovary	ovary
2	chr11:74969400-74972000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr11:74969600-74971200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:74969800-74972000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr11:74969800-74973800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr11:74969800-74976000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:74969800-74976000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:74969800-74976200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:74970000-74971600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:74970000-74976000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr11:74970600-74973000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:74970600-74973200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:74970600-74975000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:74970600-74975400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:74970600-74975800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:74970800-74972200	Enhancers	Fetal Stomach	stomach
17	chr11:74970800-74972600	Enhancers	Brain Angular Gyrus	brain
18	chr11:74970800-74973000	Enhancers	Right Ventricle	heart
19	chr11:74970800-74973200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:74970800-74973200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:74970800-74973200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr11:74970800-74975800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:74970800-74988200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr11:74971000-74971200	Enhancers	Fetal Intestine Small	intestine
25	chr11:74971000-74971200	Enhancers	Placenta	Placenta
26	chr11:74971000-74971800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:74971000-74972400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:74971000-74972600	Enhancers	Brain Cingulate Gyrus	brain
29	chr11:74971000-74972600	Enhancers	Fetal Thymus	thymus
30	chr11:74971000-74972800	Enhancers	Brain Substantia Nigra	brain
31	chr11:74971000-74972800	Enhancers	Right Atrium	heart
32	chr11:74971000-74973400	Enhancers	Primary T cells from cord blood	blood
33	chr11:74971000-74973600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr11:74971000-74974600	Enhancers	Stomach Smooth Muscle	stomach

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