Variant report

Variant	rs72998590
Chromosome Location	chr11:74946354-74946355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74940724..74942990-chr11:74944067..74946859,2	K562	blood:
2	chr11:74740374..74743027-chr11:74944019..74946597,2	K562	blood:
3	chr11:74942728..74948814-chr11:74950284..74954015,8	K562	blood:
4	chr11:74913945..74915604-chr11:74943614..74946401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261594	Chromatin interaction
ENSG00000255136	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12721494	0.84[EUR][1000 genomes]
rs17133815	0.92[EUR][1000 genomes]
rs17133831	0.82[EUR][1000 genomes]
rs17133844	0.89[EUR][1000 genomes]
rs17133848	0.89[EUR][1000 genomes]
rs17133858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801906	0.82[EUR][1000 genomes]
rs2035208	0.82[EUR][1000 genomes]
rs34827001	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41298117	1.00[EUR][1000 genomes]
rs41298121	0.82[EUR][1000 genomes]
rs4362167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56738638	0.82[EUR][1000 genomes]
rs56958854	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57277559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57279023	0.82[EUR][1000 genomes]
rs57654883	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59390914	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59940449	0.87[EUR][1000 genomes]
rs60893479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61265142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67495709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67947456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998568	0.92[EUR][1000 genomes]
rs72998587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998593	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73488764	0.82[EUR][1000 genomes]
rs7924924	0.82[EUR][1000 genomes]
rs7927925	1.00[EUR][1000 genomes]
rs7951787	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74935800-74946600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:74940800-74947200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:74945400-74951600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links