Variant report

Variant	rs1676876
Chromosome Location	chr11:74969458-74969459
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17133809	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17133815	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17133838	0.85[CEU][hapmap]
rs17133841	0.85[CEU][hapmap]
rs17133844	0.85[CEU][hapmap]
rs17133848	0.85[CEU][hapmap]
rs17133858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs2035208	0.85[CEU][hapmap]
rs3907207	0.85[CEU][hapmap]
rs4362167	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7110250	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7118873	1.00[CHB][hapmap]
rs765823	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs765824	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs7951787	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049887	chr11:74937977-75040438	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
3	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
4	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74968200-74970200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:74969200-74976600	Weak transcription	Ovary	ovary
3	chr11:74969400-74972000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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