Variant report

Variant	rs765824
Chromosome Location	chr11:74902495-74902496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:74902438-74902500	K562	blood:	n/a	n/a
2	MAZ	chr11:74902483-74902683	HepG2	liver:	n/a	chr11:74902588-74902597
3	EP300	chr11:74902353-74902732	H1-hESC	embryonic stem cell:	n/a	n/a
4	SP1	chr11:74902432-74902780	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr11:74902355-74902500	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAX	chr11:74902479-74902679	H1-hESC	embryonic stem cell:	n/a	chr11:74902588-74902597

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74899162..74902723-chr11:74903689..74908319,5	MCF-7	breast:

Variant related genes	Relation type
SLCO2B1	TF binding region
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1109407	1.00[MEX][hapmap]
rs11236363	1.00[MEX][hapmap]
rs11236364	1.00[MEX][hapmap]
rs11823030	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12289885	0.82[CEU][hapmap]
rs1676876	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17133742	1.00[MEX][hapmap]
rs17133760	0.82[CEU][hapmap]
rs17133809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133815	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs17133858	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2306167	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306168	0.82[EUR][1000 genomes]
rs3781725	0.82[EUR][1000 genomes]
rs3824904	0.82[CEU][hapmap]
rs41298117	0.93[ASN][1000 genomes]
rs4362167	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs58941788	0.93[ASN][1000 genomes]
rs61555831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118873	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs72998556	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72998568	0.93[ASN][1000 genomes]
rs73488755	0.82[EUR][1000 genomes]
rs765823	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74876200-74906200	Weak transcription	Spleen	Spleen
2	chr11:74880800-74911000	Weak transcription	Gastric	stomach
3	chr11:74881200-74905600	Weak transcription	Pancreas	Pancrea
4	chr11:74881600-74916000	Weak transcription	Small Intestine	intestine
5	chr11:74887000-74902800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:74892600-74914200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr11:74894600-74904200	Enhancers	Placenta	Placenta
8	chr11:74898400-74907000	Genic enhancers	Liver	Liver
9	chr11:74898600-74904000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:74899000-74903000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:74899000-74903400	Enhancers	Adipose Nuclei	Adipose
12	chr11:74900200-74907800	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:74900200-74908200	Enhancers	Fetal Muscle Leg	muscle
14	chr11:74901000-74903200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:74901000-74903200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:74901000-74903200	Enhancers	HepG2	liver
17	chr11:74901200-74902600	Enhancers	Colon Smooth Muscle	Colon
18	chr11:74901200-74902600	Genic enhancers	Lung	lung
19	chr11:74901200-74902600	Enhancers	Right Atrium	heart
20	chr11:74901200-74902600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:74901200-74903000	Genic enhancers	Colonic Mucosa	Colon
22	chr11:74901200-74903000	Enhancers	Esophagus	oesophagus
23	chr11:74901200-74903000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:74901200-74903000	Enhancers	Stomach Smooth Muscle	stomach
25	chr11:74901400-74902600	Enhancers	Left Ventricle	heart
26	chr11:74901400-74903000	Genic enhancers	Fetal Intestine Small	intestine
27	chr11:74901400-74903000	Enhancers	Stomach Mucosa	stomach
28	chr11:74901600-74902600	Genic enhancers	Rectal Mucosa Donor 31	rectum
29	chr11:74901600-74902600	Enhancers	Right Ventricle	heart
30	chr11:74901600-74903000	Enhancers	Fetal Thymus	thymus
31	chr11:74902000-74902600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:74902000-74903000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:74902000-74903000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:74902000-74903200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:74902000-74903200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:74902000-74903200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:74902000-74903600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:74902000-74903600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr11:74902200-74902600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:74902200-74902800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr11:74902200-74902800	Genic enhancers	Fetal Intestine Large	intestine
42	chr11:74902200-74902800	Genic enhancers	Fetal Stomach	stomach
43	chr11:74902200-74903000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:74902200-74903400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:74902400-74902800	Enhancers	Brain Germinal Matrix	brain
46	chr11:74902400-74903000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:74902400-74903000	Enhancers	Brain Hippocampus Middle	brain
48	chr11:74902400-74903000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:74902400-74903600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr11:74902400-74904200	Weak transcription	Rectal Mucosa Donor 29	rectum

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