Variant report

Variant rs5995739
Chromosome Location chr22:20888738-20888739
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:20864400-20913000 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr22:20864800-20903600 Weak transcription Fetal Brain Male brain
3 chr22:20880400-20889200 Strong transcription Dnd41 blood
4 chr22:20881400-20891800 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
5 chr22:20883000-20904600 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr22:20883200-20900000 Weak transcription H9 Cell Line embryonic stem cell
7 chr22:20883600-20889800 Enhancers Placenta Amnion Placenta Amnion
8 chr22:20883800-20891400 Enhancers Placenta Placenta
9 chr22:20884200-20889800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr22:20884200-20892200 Genic enhancers Primary T cells fromperipheralblood blood
11 chr22:20884400-20889000 Enhancers Brain Substantia Nigra brain
12 chr22:20884400-20889200 Enhancers Brain Angular Gyrus brain
13 chr22:20884400-20889200 Enhancers Left Ventricle heart
14 chr22:20884400-20889200 Enhancers Right Atrium heart
15 chr22:20884400-20889200 Genic enhancers Spleen Spleen
16 chr22:20884400-20891200 Enhancers Breast Myoepithelial Primary Cells Breast
17 chr22:20884400-20892600 Enhancers Fetal Heart heart
18 chr22:20884600-20889800 Enhancers Brain Hippocampus Middle brain
19 chr22:20884800-20889200 Enhancers Primary T killer naive cells fromperipheralblood blood
20 chr22:20884800-20889200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
21 chr22:20884800-20889800 Strong transcription Primary B cells from cord blood blood
22 chr22:20885200-20889000 Enhancers Adipose Nuclei Adipose
23 chr22:20885400-20890000 Enhancers Primary T helper naive cells from peripheral blood blood
24 chr22:20885600-20889200 Genic enhancers Thymus Thymus
25 chr22:20886000-20888800 Enhancers HMEC breast
26 chr22:20886000-20889000 Enhancers Primary T cells from cord blood blood
27 chr22:20886000-20889000 Strong transcription K562 blood
28 chr22:20886000-20891200 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr22:20886000-20891400 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr22:20886000-20900200 Weak transcription ES-WA7 Cell Line embryonic stem cell
31 chr22:20886000-20906000 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr22:20886000-20915400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr22:20886200-20888800 Enhancers Duodenum Smooth Muscle Duodenum
34 chr22:20886200-20889200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr22:20886200-20889800 Enhancers Primary T helper cells PMA-I stimulated --
36 chr22:20886200-20891200 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr22:20886200-20891400 Weak transcription Primary hematopoietic stem cells blood
38 chr22:20886200-20900200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr22:20886400-20889000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
40 chr22:20886400-20891400 Weak transcription Fetal Lung lung
41 chr22:20886600-20889800 Genic enhancers HSMM muscle
42 chr22:20886600-20896600 Weak transcription Fetal Kidney kidney
43 chr22:20886800-20889200 Enhancers Brain Inferior Temporal Lobe brain
44 chr22:20886800-20889200 Genic enhancers NHEK skin
45 chr22:20886800-20889800 Enhancers Fetal Thymus thymus
46 chr22:20886800-20890800 Weak transcription GM12878-XiMat blood
47 chr22:20886800-20891200 Weak transcription Ovary ovary
48 chr22:20887000-20889000 Enhancers Brain Cingulate Gyrus brain
49 chr22:20887000-20889200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr22:20887000-20889200 Enhancers Primary Natural Killer cells fromperipheralblood blood

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