Variant report
| Variant | rs59988600 |
|---|---|
| Chromosome Location | chr8:122192466-122192467 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:122191312..122193535-chr8:122197159..122199167,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000221644 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10505394 | 1.00[AMR][1000 genomes] |
| rs16892939 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894726 | 1.00[AMR][1000 genomes] |
| rs16894789 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894829 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894838 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894879 | 1.00[AMR][1000 genomes] |
| rs16894881 | 1.00[AMR][1000 genomes] |
| rs16894882 | 1.00[AMR][1000 genomes] |
| rs16894884 | 1.00[AMR][1000 genomes] |
| rs16894892 | 1.00[AMR][1000 genomes] |
| rs16894895 | 1.00[AMR][1000 genomes] |
| rs57662055 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58961797 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7003818 | 1.00[AMR][1000 genomes] |
| rs7004176 | 1.00[AMR][1000 genomes] |
| rs73318971 | 1.00[AMR][1000 genomes] |
| rs73318973 | 1.00[AMR][1000 genomes] |
| rs73318976 | 1.00[AMR][1000 genomes] |
| rs73322914 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73322927 | 1.00[AMR][1000 genomes] |
| rs73322930 | 1.00[AMR][1000 genomes] |
| rs73324903 | 1.00[AMR][1000 genomes] |
| rs73324907 | 1.00[AMR][1000 genomes] |
| rs73324910 | 1.00[AMR][1000 genomes] |
| rs7828556 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891424 | chr8:121873345-122393258 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv1844734 | chr8:121928250-122283585 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv3330574 | chr8:122039099-122386130 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv891426 | chr8:122078334-122393258 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1021839 | chr8:122173682-122240824 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
