Variant report

Variant	rs16894892
Chromosome Location	chr8:122211411-122211412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122208844..122212408-chr8:122215420..122219626,5	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10505394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892939	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894726	1.00[AMR][1000 genomes]
rs16894789	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894829	0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894838	0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894890	0.96[AFR][1000 genomes]
rs16894895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57662055	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58961797	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59988600	1.00[AMR][1000 genomes]
rs7003818	1.00[AMR][1000 genomes]
rs7004176	1.00[AMR][1000 genomes]
rs73318813	0.87[AFR][1000 genomes]
rs73318824	0.84[AFR][1000 genomes]
rs73318971	1.00[AMR][1000 genomes]
rs73318973	1.00[AMR][1000 genomes]
rs73318976	1.00[AMR][1000 genomes]
rs73322914	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324947	0.87[AFR][1000 genomes]
rs7828556	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3420511	chr8:122211271-122216069	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122203800-122213400	Weak transcription	Fetal Lung	lung
2	chr8:122208800-122213400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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