Variant report

Variant	rs58961797
Chromosome Location	chr8:122205712-122205713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10505394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892939	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894726	1.00[AMR][1000 genomes]
rs16894789	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894881	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894882	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894884	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894892	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894895	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57662055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59988600	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7003818	1.00[AMR][1000 genomes]
rs7004176	1.00[AMR][1000 genomes]
rs73318824	0.80[AFR][1000 genomes]
rs73318971	1.00[AMR][1000 genomes]
rs73318973	1.00[AMR][1000 genomes]
rs73318976	1.00[AMR][1000 genomes]
rs73322914	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322927	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324903	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324907	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324910	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828556	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122203800-122213400	Weak transcription	Fetal Lung	lung
2	chr8:122204800-122205800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:122205400-122206200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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