Variant report

Variant	rs16894838
Chromosome Location	chr8:122202675-122202676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10505394	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894726	1.00[AMR][1000 genomes]
rs16894789	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894829	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894879	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894881	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894882	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894890	0.85[AFR][1000 genomes]
rs16894892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894895	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57662055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58961797	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59988600	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7003818	1.00[AMR][1000 genomes]
rs7004176	1.00[AMR][1000 genomes]
rs73318813	0.80[AFR][1000 genomes]
rs73318824	0.86[AFR][1000 genomes]
rs73318971	1.00[AMR][1000 genomes]
rs73318973	1.00[AMR][1000 genomes]
rs73318976	1.00[AMR][1000 genomes]
rs73322914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322927	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322930	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324903	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324947	0.80[AFR][1000 genomes]
rs7828556	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122201400-122203000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:122201400-122203200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:122201400-122203600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:122201400-122204000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:122201400-122204400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:122201600-122203800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:122201600-122204400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:122201600-122204400	Enhancers	Osteobl	bone
9	chr8:122201800-122203800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:122201800-122204600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:122202000-122204400	Enhancers	HSMMtube	muscle
12	chr8:122202000-122204600	Enhancers	HSMM	muscle
13	chr8:122202200-122204000	Enhancers	Adipose Nuclei	Adipose
14	chr8:122202200-122204000	Enhancers	Fetal Stomach	stomach
15	chr8:122202200-122204400	Enhancers	Fetal Muscle Leg	muscle
16	chr8:122202400-122203200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:122202400-122204400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr8:122202600-122203200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:122202600-122203600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:122202600-122204400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links