Variant report

Variant	rs73318824
Chromosome Location	chr8:122224710-122224711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10100133	1.00[AMR][1000 genomes]
rs10505394	0.84[AFR][1000 genomes]
rs16894789	0.82[AFR][1000 genomes]
rs16894829	0.80[AFR][1000 genomes]
rs16894838	0.86[AFR][1000 genomes]
rs16894879	0.84[AFR][1000 genomes]
rs16894881	0.84[AFR][1000 genomes]
rs16894882	0.84[AFR][1000 genomes]
rs16894884	0.84[AFR][1000 genomes]
rs16894890	0.80[AFR][1000 genomes]
rs16894892	0.84[AFR][1000 genomes]
rs16894895	0.84[AFR][1000 genomes]
rs57662055	0.86[AFR][1000 genomes]
rs58961797	0.80[AFR][1000 genomes]
rs73318813	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318830	1.00[AMR][1000 genomes]
rs73322914	0.86[AFR][1000 genomes]
rs73322927	0.84[AFR][1000 genomes]
rs73322930	0.84[AFR][1000 genomes]
rs73324903	0.84[AFR][1000 genomes]
rs73324907	0.84[AFR][1000 genomes]
rs73324910	0.84[AFR][1000 genomes]
rs73324947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122224000-122224800	Enhancers	NHDF-Ad	bronchial
2	chr8:122224000-122225000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr8:122224200-122225000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:122224200-122225000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:122224200-122225000	Enhancers	Fetal Lung	lung
6	chr8:122224200-122225000	Enhancers	HSMM	muscle
7	chr8:122224200-122225000	Enhancers	Osteobl	bone
8	chr8:122224400-122224800	Enhancers	HSMMtube	muscle
9	chr8:122224400-122225000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:122224600-122225000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:122224600-122225000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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