Variant report

Variant	rs60103249
Chromosome Location	chr3:42862165-42862166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42813432..42816285-chr3:42861675..42864587,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244607	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13321021	1.00[EUR][1000 genomes]
rs13325328	1.00[EUR][1000 genomes]
rs1392318	1.00[EUR][1000 genomes]
rs59565527	1.00[EUR][1000 genomes]
rs72867392	1.00[EUR][1000 genomes]
rs72869014	1.00[EUR][1000 genomes]
rs9816821	1.00[EUR][1000 genomes]
rs9816972	1.00[EUR][1000 genomes]
rs9830658	1.00[EUR][1000 genomes]
rs9833785	1.00[EUR][1000 genomes]
rs9834201	1.00[EUR][1000 genomes]
rs9834527	1.00[EUR][1000 genomes]
rs9836207	1.00[EUR][1000 genomes]
rs9841211	1.00[EUR][1000 genomes]
rs9854489	1.00[EUR][1000 genomes]
rs9859496	1.00[EUR][1000 genomes]
rs9859536	1.00[EUR][1000 genomes]
rs9879123	1.00[EUR][1000 genomes]
rs9884015	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847016	chr3:42855765-42880490	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3383134	chr3:42862047-42862287	Enhancers Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42853800-42862200	Weak transcription	Fetal Intestine Small	intestine
2	chr3:42857000-42869800	Weak transcription	Colonic Mucosa	Colon
3	chr3:42859600-42863200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:42859600-42863200	Enhancers	HepG2	liver
5	chr3:42860800-42862400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:42861000-42862200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:42861000-42862800	Enhancers	Stomach Mucosa	stomach
8	chr3:42861000-42863000	Enhancers	Hela-S3	cervix
9	chr3:42861000-42863400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:42861200-42862400	Enhancers	NHEK	skin
11	chr3:42861200-42862600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:42861200-42863000	Enhancers	HMEC	breast
13	chr3:42861200-42864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:42861400-42862400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:42861400-42862400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:42861400-42862600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:42861400-42864400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:42861400-42864400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:42861600-42862200	Weak transcription	Placenta	Placenta
20	chr3:42861600-42862800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:42861600-42864200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:42861600-42864200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:42861600-42864400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:42861600-42873000	Weak transcription	Esophagus	oesophagus
25	chr3:42861600-42885400	Weak transcription	Pancreas	Pancrea
26	chr3:42861800-42862200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:42861800-42864400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:42861800-42865000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr3:42861800-42868400	Weak transcription	Liver	Liver
30	chr3:42861800-42872600	Weak transcription	Brain Anterior Caudate	brain

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