Variant report

Variant	rs9836207
Chromosome Location	chr3:42900667-42900668
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13321021	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13325328	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1392318	1.00[EUR][1000 genomes]
rs59565527	1.00[EUR][1000 genomes]
rs60103249	1.00[EUR][1000 genomes]
rs72867392	1.00[EUR][1000 genomes]
rs72869014	1.00[EUR][1000 genomes]
rs9816821	1.00[EUR][1000 genomes]
rs9816972	1.00[EUR][1000 genomes]
rs9830658	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9833785	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9834201	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9834527	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9841211	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9854489	1.00[EUR][1000 genomes]
rs9859496	1.00[EUR][1000 genomes]
rs9859536	1.00[EUR][1000 genomes]
rs9879123	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9884015	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429579	chr3:42898402-42907671	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42893400-42906000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:42894800-42912800	Weak transcription	Right Atrium	heart
3	chr3:42897800-42905800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:42897800-42913400	Weak transcription	Pancreas	Pancrea
5	chr3:42898600-42905600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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