Variant report

Variant	rs9816821
Chromosome Location	chr3:42921915-42921916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:42921846-42923014	SK-N-SH	brain:	n/a	chr3:42922641-42922659 chr3:42922407-42922420
2	RAD21	chr3:42921738-42923282	SK-N-SH	brain:	n/a	chr3:42921971-42921984 chr3:42922639-42922658
3	SMC3	chr3:42921748-42923302	SK-N-SH	brain:	n/a	chr3:42922643-42922657
4	POLR2A	chr3:42921900-42922920	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:42871820..42873679-chr3:42920996..42922942,2	MCF-7	breast:
2	chr3:42921878..42924561-chr3:43679352..43680976,2	MCF-7	breast:
3	chr3:42843552..42845487-chr3:42920948..42923647,2	K562	blood:
4	chr3:42871994..42873616-chr3:42921171..42922839,2	MCF-7	breast:
5	chr3:42871457..42873559-chr3:42921313..42923126,29	K562	blood:
6	chr3:42911291..42913761-chr3:42921199..42924078,2	K562	blood:

Variant related genes	Relation type
CYP8B1	TF binding region
ENSG00000160746	Chromatin interaction

rs_ID	r²[population]
rs13321021	1.00[EUR][1000 genomes]
rs13325328	1.00[EUR][1000 genomes]
rs1392318	1.00[EUR][1000 genomes]
rs59565527	1.00[EUR][1000 genomes]
rs60103249	1.00[EUR][1000 genomes]
rs72867392	1.00[EUR][1000 genomes]
rs72869014	1.00[EUR][1000 genomes]
rs9816972	1.00[EUR][1000 genomes]
rs9830658	1.00[EUR][1000 genomes]
rs9833785	1.00[EUR][1000 genomes]
rs9834201	1.00[EUR][1000 genomes]
rs9834527	1.00[EUR][1000 genomes]
rs9836207	1.00[EUR][1000 genomes]
rs9841211	1.00[EUR][1000 genomes]
rs9854489	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859496	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs9859536	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs9879123	1.00[EUR][1000 genomes]
rs9884015	1.00[EUR][1000 genomes]

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42911400-42922000	Weak transcription	Gastric	stomach
2	chr3:42913000-42922000	Weak transcription	Spleen	Spleen
3	chr3:42914400-42922000	Weak transcription	Right Atrium	heart
4	chr3:42917800-42922000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:42919000-42922000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:42919000-42922000	Weak transcription	Fetal Intestine Small	intestine
7	chr3:42919200-42922000	Weak transcription	Fetal Heart	heart
8	chr3:42920000-42922000	Weak transcription	HepG2	liver
9	chr3:42920200-42922000	Weak transcription	Fetal Lung	lung
10	chr3:42921400-42922200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr3:42921800-42922000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:42921800-42922000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:42921800-42922000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:42921800-42922000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:42921800-42922000	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:42921800-42922000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:42921800-42922000	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:42921800-42922000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:42921800-42922000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr3:42921800-42922000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:42921800-42922000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr3:42921800-42922000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr3:42921800-42922000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:42921800-42922000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:42921800-42922000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:42921800-42922000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:42921800-42922000	Enhancers	Brain Angular Gyrus	brain
28	chr3:42921800-42922000	Enhancers	Brain Anterior Caudate	brain
29	chr3:42921800-42922000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:42921800-42922000	Enhancers	Colonic Mucosa	Colon
31	chr3:42921800-42922000	Enhancers	Colon Smooth Muscle	Colon
32	chr3:42921800-42922000	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr3:42921800-42922000	Enhancers	Placenta	Placenta
34	chr3:42921800-42922000	Enhancers	Left Ventricle	heart
35	chr3:42921800-42922000	Enhancers	Ovary	ovary
36	chr3:42921800-42922000	Enhancers	Psoas Muscle	Psoas
37	chr3:42921800-42922000	Enhancers	Right Ventricle	heart
38	chr3:42921800-42922000	Enhancers	Stomach Mucosa	stomach
39	chr3:42921800-42922200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr3:42921800-42922200	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr3:42921800-42922200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:42921800-42922200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr3:42921800-42922200	Flanking Active TSS	Liver	Liver
44	chr3:42921800-42922200	Flanking Active TSS	Brain Germinal Matrix	brain
45	chr3:42921800-42922200	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr3:42921800-42922400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:42921800-42922400	Flanking Active TSS	Pancreas	Pancrea
48	chr3:42921800-42922800	Active TSS	Rectal Smooth Muscle	rectum
49	chr3:42921800-42923000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links