Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42985071..42987578-chr3:42988913..42992487,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13321021	1.00[EUR][1000 genomes]
rs13325328	1.00[EUR][1000 genomes]
rs1392318	1.00[EUR][1000 genomes]
rs17074769	1.00[AMR][1000 genomes]
rs17075161	1.00[AMR][1000 genomes]
rs17075178	1.00[AMR][1000 genomes]
rs59565527	1.00[EUR][1000 genomes]
rs59658902	1.00[AMR][1000 genomes]
rs60103249	1.00[EUR][1000 genomes]
rs60848234	1.00[AMR][1000 genomes]
rs72869014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940086	1.00[AMR][1000 genomes]
rs9816821	1.00[EUR][1000 genomes]
rs9816972	1.00[EUR][1000 genomes]
rs9830658	1.00[EUR][1000 genomes]
rs9833785	1.00[EUR][1000 genomes]
rs9834201	1.00[EUR][1000 genomes]
rs9834527	1.00[EUR][1000 genomes]
rs9836207	1.00[EUR][1000 genomes]
rs9841211	1.00[EUR][1000 genomes]
rs9854489	1.00[EUR][1000 genomes]
rs9859496	1.00[EUR][1000 genomes]
rs9859536	1.00[EUR][1000 genomes]
rs9879123	1.00[EUR][1000 genomes]
rs9884015	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42978400-42990600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:42978400-42994400	Weak transcription	Fetal Stomach	stomach
3	chr3:42978400-42995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:42978400-43003000	Weak transcription	Fetal Intestine Small	intestine
5	chr3:42978400-43015400	Weak transcription	Pancreas	Pancrea
6	chr3:42978600-42991000	Weak transcription	Brain Anterior Caudate	brain
7	chr3:42978600-43003000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:42978600-43020400	Weak transcription	Ovary	ovary
9	chr3:42979000-42991600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:42981400-42995800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:42983600-43003400	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:42985000-42990600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:42985000-43003000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:42985200-42997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:42985200-43003000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:42988400-43015400	Weak transcription	Placenta	Placenta
17	chr3:42989600-42994400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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