Variant report
Variant | rs6014008 |
---|---|
Chromosome Location | chr20:53025252-53025253 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:53024067..53025831-chr20:53028863..53030621,2 | MCF-7 | breast: | |
2 | chr20:53012918..53016705-chr20:53024723..53027233,3 | MCF-7 | breast: | |
3 | chr20:53023761..53025464-chr20:53111873..53113529,2 | MCF-7 | breast: | |
4 | chr20:53019454..53021882-chr20:53023478..53026443,2 | MCF-7 | breast: | |
5 | chr20:53024747..53028563-chr20:53034818..53037384,3 | MCF-7 | breast: | |
6 | chr11:45927481..45930369-chr20:53023684..53026134,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000234776 | Chromatin interaction |
ENSG00000255498 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1321466 | 1.00[EUR][1000 genomes] |
rs1321467 | 1.00[EUR][1000 genomes] |
rs1812372 | 1.00[EUR][1000 genomes] |
rs28578506 | 0.86[EUR][1000 genomes] |
rs28662069 | 1.00[EUR][1000 genomes] |
rs6014000 | 1.00[EUR][1000 genomes] |
rs6014001 | 1.00[EUR][1000 genomes] |
rs6014002 | 1.00[EUR][1000 genomes] |
rs6014009 | 1.00[EUR][1000 genomes] |
rs6014010 | 1.00[EUR][1000 genomes] |
rs6014012 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6023149 | 0.86[EUR][1000 genomes] |
rs6023150 | 1.00[EUR][1000 genomes] |
rs6023190 | 1.00[EUR][1000 genomes] |
rs6023194 | 1.00[EUR][1000 genomes] |
rs6023195 | 1.00[EUR][1000 genomes] |
rs6023196 | 1.00[EUR][1000 genomes] |
rs6023204 | 1.00[EUR][1000 genomes] |
rs6023206 | 1.00[EUR][1000 genomes] |
rs6023208 | 1.00[EUR][1000 genomes] |
rs6023209 | 1.00[EUR][1000 genomes] |
rs6023212 | 1.00[EUR][1000 genomes] |
rs6023219 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6023222 | 1.00[EUR][1000 genomes] |
rs6023223 | 1.00[EUR][1000 genomes] |
rs6023224 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6023225 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6023226 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6091866 | 1.00[EUR][1000 genomes] |
rs6091868 | 1.00[EUR][1000 genomes] |
rs6091869 | 1.00[EUR][1000 genomes] |
rs6091870 | 1.00[EUR][1000 genomes] |
rs6091873 | 1.00[EUR][1000 genomes] |
rs6091880 | 1.00[EUR][1000 genomes] |
rs6091881 | 0.86[EUR][1000 genomes] |
rs6097956 | 1.00[EUR][1000 genomes] |
rs6097968 | 1.00[EUR][1000 genomes] |
rs6097969 | 1.00[EUR][1000 genomes] |
rs6097970 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6097976 | 1.00[EUR][1000 genomes] |
rs6097977 | 1.00[EUR][1000 genomes] |
rs73273209 | 1.00[EUR][1000 genomes] |
rs7343545 | 1.00[EUR][1000 genomes] |
rs8114344 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
2 | nsv834011 | chr20:52858341-53086042 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
3 | nsv834012 | chr20:52921007-53097177 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:53025200-53027000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |