Variant report

Variant	rs6091870
Chromosome Location	chr20:53033458-53033459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53015482..53018315-chr20:53032889..53035718,2	K562	blood:
2	chr20:53032153..53034811-chr9:37421058..37422667,2	MCF-7	breast:
3	chr20:53028966..53030621-chr20:53031320..53033737,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137106	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1321466	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321467	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1812372	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28578506	0.86[EUR][1000 genomes]
rs28648440	0.89[AMR][1000 genomes]
rs28662069	1.00[EUR][1000 genomes]
rs6014000	1.00[EUR][1000 genomes]
rs6014001	1.00[EUR][1000 genomes]
rs6014002	1.00[EUR][1000 genomes]
rs6014008	1.00[EUR][1000 genomes]
rs6014009	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6014010	1.00[EUR][1000 genomes]
rs6014012	1.00[EUR][1000 genomes]
rs6023149	0.86[EUR][1000 genomes]
rs6023150	1.00[EUR][1000 genomes]
rs6023190	1.00[EUR][1000 genomes]
rs6023194	1.00[EUR][1000 genomes]
rs6023195	1.00[EUR][1000 genomes]
rs6023196	1.00[EUR][1000 genomes]
rs6023204	1.00[EUR][1000 genomes]
rs6023206	1.00[EUR][1000 genomes]
rs6023208	1.00[EUR][1000 genomes]
rs6023209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6023212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6023219	1.00[EUR][1000 genomes]
rs6023222	1.00[EUR][1000 genomes]
rs6023223	1.00[EUR][1000 genomes]
rs6023224	1.00[EUR][1000 genomes]
rs6023225	1.00[EUR][1000 genomes]
rs6023226	1.00[EUR][1000 genomes]
rs6091866	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6091868	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6091869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6091873	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6091880	1.00[EUR][1000 genomes]
rs6091881	0.86[EUR][1000 genomes]
rs6097956	1.00[EUR][1000 genomes]
rs6097968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6097969	1.00[EUR][1000 genomes]
rs6097970	1.00[EUR][1000 genomes]
rs6097976	1.00[EUR][1000 genomes]
rs6097977	1.00[EUR][1000 genomes]
rs73273209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7343545	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8114344	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53033400-53033600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:53033400-53033600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr20:53033400-53033600	Enhancers	Pancreas	Pancrea
4	chr20:53033400-53033600	Enhancers	HSMMtube	muscle
5	chr20:53033400-53033800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:53033400-53033800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr20:53033400-53033800	Bivalent Enhancer	Ovary	ovary

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