Variant report

Variant	rs6097976
Chromosome Location	chr20:53047821-53047822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53046706..53049615-chr20:53062995..53067004,4	MCF-7	breast:
2	chr20:53046803..53048653-chr20:53048671..53050207,2	MCF-7	breast:
3	chr20:53046792..53051397-chr20:53051595..53055761,6	MCF-7	breast:
4	chr20:52966016..52968802-chr20:53047738..53049878,2	MCF-7	breast:
5	chr20:52875468..52877266-chr20:53046820..53048622,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1321466	1.00[EUR][1000 genomes]
rs1321467	1.00[EUR][1000 genomes]
rs1812372	1.00[EUR][1000 genomes]
rs28578506	0.86[EUR][1000 genomes]
rs28662069	1.00[EUR][1000 genomes]
rs34582270	1.00[AMR][1000 genomes]
rs55985689	0.99[ASN][1000 genomes]
rs6014000	1.00[EUR][1000 genomes]
rs6014001	1.00[EUR][1000 genomes]
rs6014002	1.00[EUR][1000 genomes]
rs6014008	1.00[EUR][1000 genomes]
rs6014009	1.00[EUR][1000 genomes]
rs6014010	1.00[EUR][1000 genomes]
rs6014012	1.00[EUR][1000 genomes]
rs6023149	0.86[EUR][1000 genomes]
rs6023150	1.00[EUR][1000 genomes]
rs6023190	1.00[EUR][1000 genomes]
rs6023194	1.00[EUR][1000 genomes]
rs6023195	1.00[EUR][1000 genomes]
rs6023196	1.00[EUR][1000 genomes]
rs6023204	1.00[EUR][1000 genomes]
rs6023206	1.00[EUR][1000 genomes]
rs6023208	1.00[EUR][1000 genomes]
rs6023209	1.00[EUR][1000 genomes]
rs6023212	1.00[EUR][1000 genomes]
rs6023219	1.00[EUR][1000 genomes]
rs6023222	1.00[EUR][1000 genomes]
rs6023223	1.00[EUR][1000 genomes]
rs6023224	1.00[EUR][1000 genomes]
rs6023225	1.00[EUR][1000 genomes]
rs6023226	1.00[EUR][1000 genomes]
rs6023411	1.00[AMR][1000 genomes]
rs6023415	1.00[AMR][1000 genomes]
rs6091866	1.00[EUR][1000 genomes]
rs6091868	1.00[EUR][1000 genomes]
rs6091869	1.00[EUR][1000 genomes]
rs6091870	1.00[EUR][1000 genomes]
rs6091873	1.00[EUR][1000 genomes]
rs6091880	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6091881	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6097956	1.00[EUR][1000 genomes]
rs6097968	1.00[EUR][1000 genomes]
rs6097969	1.00[EUR][1000 genomes]
rs6097970	1.00[EUR][1000 genomes]
rs6097977	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73273209	1.00[EUR][1000 genomes]
rs7343545	1.00[EUR][1000 genomes]
rs8114344	1.00[EUR][1000 genomes]
rs8115818	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53047400-53050800	Enhancers	Fetal Brain Female	brain
2	chr20:53047600-53048400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:53047600-53048400	Enhancers	Brain Germinal Matrix	brain
4	chr20:53047600-53049000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr20:53047600-53049200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:53047600-53051600	Enhancers	Fetal Brain Male	brain

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